NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1000131

Scaffold Ga0272435_1000131


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1000131 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)135636
Total Scaffold Genes153 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (18.30%)
Novel Protein Genes12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (16.67%)
Associated Families11

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001253Metagenome736Y
F004755Metagenome424Y
F006206Metagenome378Y
F008115Metagenome338Y
F011463Metagenome290Y
F042102Metagenome158Y
F044226Metagenome154Y
F055317Metagenome138Y
F068292Metagenome124Y
F076668Metagenome117Y
F086375Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_1000131108F011463N/AMKELLNFNHQQLKKTKLTIKVQINKHKXDVTYEVNDXVXLSFRNVKTTKLCKDLKDKQLNLYQITAKVNIFYHLHLSVSMKHLHSMFSLKLLXLYSEDLLSEQHSESLRSIIIEDDEHXKIDDILNFRCYXDRIQYKVKXKDLDKDDEXYYVDKEKFDDSEKVLNEFHKLYSSKSR
Ga0272435_100013111F044226N/AMQNDXAKXLSMMKFSENFNIFLIISMTSFYFNKNFHSXMSFNSNTINYETTCECFEARKADDIII
Ga0272435_1000131129F042102N/AMTRSSESASIARYELQNARRESLLSQNRTVSEEEDTNASSNTEKENTNALLFDHEMIKISINTELNAXISTHEADDIVVFIKYMCQQHDIEIEIYNDMIQMLEDVNEINITLKITQTRLQKENRNKSVIIRHLEAASSRKSTSISEDQFLKSIKLLNSSLFEDSMQNVDNXLFQMRNKLKTNKNHFSIEELKIAYIESRVSEAATKHIASRMQDIFLNSFLEVEEVLSIINKMYDDLNHHHTTQRQYLKLYQNKIFFHEFXMKFQRFSAELEYNNKILLDDLQHKISSDLQRATLNERITNLNELIDICMRVDVRLTELNARSVVKASATQAARSVSNTSTARLTSSVSSXKKLRRSNLDSIQKELFKKELCFKCKKSEHRAYDCLEMTQVHEIAANSKNDLLSSK
Ga0272435_1000131142F001253N/ALSQXDHYVKRREEIIYREIEEXGKKLVTFIKDTMKDVCISSTISSSNDFFALKSLITECVLSSNEISYSLKSLIDIEAADYSFIDELIAQNVFDHLQIKSLSLIKLKSIRKFDDHYAKKLIIHAIYLNLTVQDHTINTTFMLITXLN
Ga0272435_1000131144F008115N/AMLXNVYRLHDLFSSIVSNRDSQFISTMXKSLCKRLRITASLFTVYHFEIDDQSKRVNQDVECKLKIYCNYMQNDXVKXISMMKFSNNFNIFLITSMTFFYFNKEFHFRISFNSDTTDYKTTCEXLEVRKTDDIVIXMKELLSFDHQQLKKTKLIIKVQINKHRXDVTYEVDDXVXLSFRNVKTTRLCKDLKDKQLNLYQITAKVSIFYHLHLLVSMKHLHSMFSSKLLXLYSKDFLSEQHSKSLRSITIKDDEHXKINDILNFRCY
Ga0272435_1000131147F006206N/AVKSISLCNLDEILSKENYFDKLFLVDALLILQNESFSLRSLIDSDSVVYTIIHINLVDKVCKELKIQSISLTKEKLIKEYDEKIFKKTITHKILLNLIIESHKKLTVSMLIADIEHHEVILEKS
Ga0272435_1000131148F055317N/ALKAKLQAFTAITVNVIITAFSVVIYFERSRYHKILDSLMFTDEKNSTXKNXSLDIREKLAINVDIFSNELYKLSYINFQLADNVVKITQVRCNSNCDNFYLTVNELLKKLAQSFHDSDKKDNYRRKYINLIQESKKFSDFFNQFQRLYIYLKYQKNVLVVNLKNKINSRLXIFXTAQMKSLIKLSNIQNYLICLNNEHKAVQEIKNKLLKHNDSKIIISRATIAVQSSTLKSDXSKSRSAVLTNVKNADVLVEICFVCHKSDHSFKECLN
Ga0272435_10001313F076668N/AMTCLLLTSSFLACASARKTSKSSMHLTDHYAIKETSVFKSTTTTKMIMHMNNALFIDILMLCNRKDVTNQALLRCAKFENIRRLQKISFSKXSSKDXLKRLCMIMLKRTCYNMIFAFSILSXMLFKKSLKTLXFSLXKVSALLFCIITLVVEFSLTFCSMQTSTXQQFMLNASSFKIKIXDLXRISXXILMSCFSRQTRKCLFSSVR
Ga0272435_100013132F068292GAGVKQRQADXSMLRQDTQSAEQXVNQKVERSSTFEAHSQRESSTLSENENDYYKFIKLLNSLIFIETDDSIXETXNIKIVDKLDVNANHYSTKKICIVYVIFRLEDDADQQIYAKHHVDAFSFYQSLSELLKHLKEIYEDQNLIQKYHHEYITLKQLNKLFSSFYSEFTRIFSFLNYNDITLMNNIQNKINNHLQNVLSVCLIEFSSLDKLKIFLQDVNNKQXVNYQLRDE
Ga0272435_10001314F086375N/AMFTLFVNSKSIVSXNLDENXFNKIKEHYKRQNNNCVVIFKXLHKLRQFNIXKKVNEIDKAVMKDNVRDEIKQEQKNKDIHDNASQ
Ga0272435_100013182F011463N/AMKELLSFDHQQLKKTKLIIEVQINKHKRNVTYEVDDXVXLSFRNVKTTRLCKDLKDKQLNLYQITAKMSIFYHLHLSVSMKHLHSIFSSKLLQLYSEDLLSEQHSESLRSIIIKDNEHXKINDILNFRRYQGXIQYKVKXKDLDKDDE
Ga0272435_100013187F004755GAGLSYVHSRLFNDAAEIIQARCKRDCVNLYRIVEDLLKELAQLFNDLNKKVNFRKEYYNLIQESKKFSEFYTQFQQLSFYLDYHEKQLIVDLKDKINPRLXFVXIDQLVQSDFLKEICFYLIYLNNDQRVIXEIKNKVNLIKCINNLSKIIFHKAVVTQSVDHSKSDHLKSRDAILTNVKKADVVVEICFICHKSDHSFRECLDRSTRINAVNDEYDCFDFDSNFDSKN
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