 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031447 Open in IMG/M |
| Scaffold ID | Ga0272435_1000134 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 134229 |
| Total Scaffold Genes | 160 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 86 (53.75%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.7 | Long. (o) | 159.2 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F003820 | Metagenome | 466 | Y |
| F006206 | Metagenome | 378 | Y |
| F017941 | Metagenome | 237 | Y |
| F021452 | Metagenome | 218 | Y |
| F036036 | Metagenome | 170 | Y |
| F044226 | Metagenome | 154 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272435_100013412 | F021452 | N/A | MPDDSFDFKSFTVDVILSSLEKIFRFSTLIDTEVTDMIFIDESLMSELCERFDIQSISLSKSKSIQSYDEISDRKSITHALYTSIMIQEHKNEMMSLLITHLDQHKIIIENL |
| Ga0272435_100013415 | F044226 | GAG | MIEFSDNVNMFSIISMISFYFNKEFHSRMSFNSDTTDYKITRERIEARKADDIII |
| Ga0272435_100013416 | F036036 | N/A | MLVSLIHHLLSCFDQSFASKDQCFIHVIEYIFDSSNLQTFANAFILDDVRIEAHMRMKVLVHEEESQEDD |
| Ga0272435_100013418 | F017941 | N/A | MKIADLKENNDQSIYKQVLDANEIDENCTLLREAIARDEAQYEDIKLKNC |
| Ga0272435_100013422 | F000597 | N/A | MKDVLISLTMSMSDDSFTSESLIIECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVYDQLQIKFLTLIKAKSIQEFDDHYAKKFIIYVIYSNLTVQNHTIDTASMLIT |
| Ga0272435_100013423 | F003820 | N/A | MKLFNYLNYDDCTLMNDFQNKINNCLQNTLSVCSKNFTSLTRLRIFLQDVNNKQQVNYQLRSQLCTVIIKVTIIFDKCIATSLSAVMISIIKYVKSIIFSIFESVRSSIVCYICKISDHLFKNCFQNKISILTSCAFTLHLNT |
| Ga0272435_10001345 | F006206 | N/A | VKIISLCNLNEILSKENYFDKSFLVDALLISQNESFSLHSLIDSDSVIYMIIHINLVDRVCKELRIQSISLTKEKLIKEYDEKIFKKTITHKILSNLIIKSHKKLTVSMLIADIYHHEVILEKS |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |