NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1000138

Scaffold Ga0272435_1000138


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1000138 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)130013
Total Scaffold Genes157 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)84 (53.50%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F001951Metagenome612Y
F025887Metagenome199Y
F036036Metagenome170Y
F094626Metagenome105Y
F102181Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_1000138146F102181N/AMKKVMIIVHIHALYQTLLSCIQSIFVSLILKYVKKFLEFRSDDDSDRVCREMNDERRLIIQDLCDDLSYHCKRLKIQFYIN
Ga0272435_1000138148F001951N/AMMIIMKLKFIDLSRNEKERDEDTVEITVTEMMIFELKKLLINAKMLLTLINETMMKIK
Ga0272435_1000138149F094626N/AMFLNERNIITARFFKKLNDKMLNSFINLNFIDSSYKLKLLKFIHIHDVFHSDLLCSVVDDLLSDQKNELLNLIVINNEDE
Ga0272435_1000138154F025887N/AMSDDSFNFKSFTVDVILSNLEKIFRSLALINTKVIDMTFINESLMSELCECFDIQSISLSKSKSIQLYDEISD
Ga0272435_10001382F000597N/AMSDDSFASESLITECVLSSNEISYSLKSLIDIKAADYSFIDEVIAQIVCDQLQIEFLTLIKAKSIQEFDDHYAKKLITHVIYSNLTVQDHMIDTVSMLITQLDQHQMILEKT
Ga0272435_10001388F036036N/AMLVNLIHHLFSCFDQSFTSEDQCLVHLFRYILDSINLQAFANAFILDDVRVEAHTRVKALVHEEENQEDD

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