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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031447 Open in IMG/M |
| Scaffold ID | Ga0272435_1000141 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 127532 |
| Total Scaffold Genes | 150 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 66 (44.00%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (22.22%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.7 | Long. (o) | 159.2 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F008668 | Metagenome | 329 | Y |
| F013598 | Metagenome | 269 | Y |
| F017941 | Metagenome | 237 | Y |
| F021452 | Metagenome | 218 | Y |
| F032102 | Metagenome | 180 | Y |
| F069514 | Metagenome | 123 | Y |
| F094626 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272435_1000141135 | F013598 | N/A | MNFIIDLSDSYNYNVILTVICKLLKERHYVFCIIDDEDITVEKTAEMLLQ |
| Ga0272435_1000141136 | F017941 | N/A | MKIADLKKNISESIYKQILETNEIDENCTLLREVIAKDKAQYKNIKLKKC |
| Ga0272435_1000141139 | F000597 | N/A | MSDDSFASESLTIKCVLSSNEISYSLKSLIDIEAADYLFIDEVIVQIVYDQLQIEFLTLIKAKSIREFDDHYAKRLITYVIYLNLTVQDHMIDTASMLITQLNQHQMILEKI |
| Ga0272435_1000141143 | F021452 | N/A | MSDDSFDFKSFTVDVILNSLEKIFRSLVLIDTEVTDMTFIDESLMSELCKRFNIQSISLSKSKSIQTYDEISDRKSITYALYTSIMIQEHKNEMMFLLITRLDQHKIIIENF |
| Ga0272435_1000141149 | F008668 | N/A | MILFYFNKEFHSRMSFDSDTTDYETTRERLEARKADDIVIQMKELLSFDRQQLKKTKLIIKVQINKHRRDVTYEVNN |
| Ga0272435_100014124 | F094626 | GAG | MMKQVNKYKKEVDYEIKSKMFLNERNIITARFFKKLNDKMLDSFINLDFINSSYKLKLSKFMHIYDVFHSDLLCSVVDDFLSDQKNESSDLIVINDEDE |
| Ga0272435_100014125 | F069514 | GAG | MIEFIDNNALFSVIFSISFFLNKDFHSHMSFELDVSKYESFHECLQMTKVKNISKHMNKTLKFAHELLVKT |
| Ga0272435_10001416 | F000597 | N/A | MSDDSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKFIREFDDHYVKKLITHVIYSNLTVQDHTIDTAFMLITRLNQHQMILKKT |
| Ga0272435_10001419 | F032102 | N/A | MKIADLEKNISESIYKQILEINEIDENCMLLRKAIARDETQYEDIKLKNCRIQNEILYKDSQL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |