NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1000163

Scaffold Ga0272435_1000163


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1000163 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)119946
Total Scaffold Genes143 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)82 (57.34%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006206Metagenome378Y
F017767Metagenome238Y
F032102Metagenome180Y
F081945Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_100016315F032102N/AMKIADLEKNISESIYKQVLDVNEIDENCTLLREAKVRDEAQCKDIKLKNCRVQNEILYKDSQL
Ga0272435_100016320F017767N/AMKDVLISSTMSMSDDSFASESLITECVLSSNEISYSLKSLIDIKAADYSFIDKVIMQIVCDQ
Ga0272435_10001637F006206GAGLCKLDEILLKKNYFKKSFLIDAHLIFQKQSFSLHSLINSDSVVYMIIHFNLVDKVCEKLKIQSISLTKEKLVRNYDEKIFKKTITHKILFNLIIESHKKLTVSILIADINHHEVILSKL
Ga0272435_10001639F081945N/AMFSHSSTEEHSERFRTYFSQIFDADSLKSQTKSSSAASFIHEDDESFAETIILLVFYKI
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