NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1000187

Scaffold Ga0272435_1000187


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1000187 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)111763
Total Scaffold Genes122 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (18.03%)
Novel Protein Genes18 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (11.11%)
Associated Families17

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001253Metagenome736Y
F003820Metagenome466Y
F008115Metagenome338Y
F009377Metagenome318Y
F017941Metagenome237Y
F018839Metagenome232Y
F028667Metagenome190Y
F033264Metagenome177N
F033265Metagenome177Y
F036035Metagenome170Y
F036504Metagenome169Y
F046102Metagenome151Y
F068292Metagenome124Y
F070710Metagenome122Y
F070711Metagenome122Y
F094622Metagenome105Y
F100079Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_1000187118F070710N/AMKQSFLQILQYNIRKSLKIQKSFLINRKIRDFDIIVIQKQSCNINDIQSFNSAHNFFYLVKNTSSQSRICIYVNKCLKLNQXMIETVELNICLIRILIYNTDDKMQMLQLINIYNLCSLFFTFTEKSLIISRLSELLKNDCKQLIIKDFNLHHSHXEKXRCFT
Ga0272435_1000187119F009377N/AMTRSTELESESVSMTRYETQDAERESLLSQNXTASEEENTNVLLFNHEIIKISISTELNAXISAHEADDLVVFIKYICQQHDIEIKIYNDIIQMLNDINKINVELKAINIKLKVTQTTLNVVQTRLQKEMKKKNVIIHHLEVISSXLSTLISKDQFLKLIKLSDSSLFEDSRQNVNN
Ga0272435_100018713F033265AGAAGMTFQSKKQFELCYETFIDCMIYSVLLFQTETFNSYQLCEKVFASDXESQLVYSQSIILRLTINQNKSIKMLNANLEFTAITCRMIESNEYLXXNSATISIFSQSLQXFSFTSIKNFTLEXVSIQIQLTMKQLINDLKLEKQMILSFKXKSYXALIINNXKRRSXSLKVESINIDKTSHMK
Ga0272435_100018724F008115N/ALLQSLLISQQRXQDIVMNFITELFLLKNYNVIFMIICCFFKEHYYVFCYXEDNNISIEETVXIMLXNVYXLYDLLSSIVSNRDFQFILIMXQSLCKXLKIKVNLSTVYHLKIDDQSKXVNQDVECKLXIYCNYMQNDXAKXLSMMKFNDNFNTFLTILMTSFYFNKDFHSXMSFNSNTTDYEMIHQRIKVRKINDIIIXMSELLIFDHQQLKKIKQIIEAQMNKHKXDIIYEVNDQVXLVFENIKITKSCKDLKDKQLDLYSITVKVEIFYHLQLFRSMKHIHLMFSLKCLQSSSNDFLSRQHSESSKLIIIEENEKHXKVNNILNFRQYKERL
Ga0272435_100018726F036504N/AMNHYSTEKICIVYVIFRLEGDADQQIYAKHHVDAFSFYQSLSELLKHLKEIYEDQNLIXKCCCKYVALKQLNKSFSSFYSEFTRIFSFLNYDDIILMNDIQNKINNHLQNALSVCLIKFSSLDKLKIFLQDVNNKQRVNYQLRDEQXTVKSIAASKKRFVSSSTSALTTSYVXLATFSIFEPEXSRMLIICFNCKVSSHLSKNCSQLKTSTLTSHAFISRLNEIIMSKEEKKLFTEKSKNEAKN
Ga0272435_100018727F046102GAGGVTFIKDVMKDVLISSTTSSSNDLFALKSLTTECVLSSNEISYSLKSLIDIEAADYSFIDELTAQNVCDHLQIKSLPLIKLKSIREFDDHYAKRLITHAIYLNLTVQDYIKRFVFMLITXLSQHQIILEKTXMNKIEITIDIRNDHLQFSDSKTHIDASLISLSVIKKIAIKQKSSIST
Ga0272435_100018741F100079N/AMFRYRHFIHKQYVDEKTLLKEEKYKQVNKEXLNYAV
Ga0272435_100018745F033264N/AMSNSNDFFALKFLTTECILSSNEINYSLKSLIDIKAADYSFIDKLIAQNVYDHLQIKFLTLIKAKSIQEFDDHYVKKLITYVIYLNLTV
Ga0272435_100018755F001253N/AMKDVLISSTMSSSNDFFASKSLTTEDVLFSNEINYSLKSLIDTETTDYSFINELIAQNVCDHLQIEFLSLIKLKSIRRFNDHYAKKLITHAIYSNLTVQDYMKRFTFMLIT
Ga0272435_100018756F068292N/AMSRQDTQSAEQQVNQKEVFMISVLIHCSEVKXSSTFEAHFQXKSSTLFDNENENNYHKFIKLLNSLIFIETDDFIXKTXNIKIVNKLNVNANHYSTEKICIVYVIFKLENNADQQIYAKHYVDAFSFYQSLLKLLKHLKEIYKDQNLIXKYHHEYVALKQLNKFFSSFYSEFTRIFSFLNYNDITLMNNIQNKINNHLQNVLSVCFIKFSSLDKLKIFLQDVNNKQQVNYQLRDE
Ga0272435_100018767F018839N/AMIAKVVTFNRLTSDLYAAVFIIAMFIELKDEARLIKLNDFTILLNEDDFSLSXMTTEKINFFSI
Ga0272435_100018768F001253N/ALSQXDHHIKRKEEIIYREIKEXDKKLVTFIKDMMKDVLISSTISSSNDLFALKFLTIKCILFSNEINYLLKSLIDTKAADYSFIDELIAQNVCDHLQIESLSLIKLKSIREFNDHYAKKFITYAIYSNLTVQDHMKRFASMLITQLSQH
Ga0272435_100018771F017941N/AMKIADLKKNIDELIYKQILEINEINENCMLLREAIARDET
Ga0272435_100018786F070711N/AMKDVLISSMISMLNNSFTSESLTIKCILSSNEISYSLKSLINIEAADYSFINKVMTQIVC
Ga0272435_100018787F003820N/AMKLFSYFKYDDCILMNDLQNKINNRLQNALSVYSKNFTSLTHLKIFLQDVNNKQXVNYQLRSERCIIIIKVTVISDKHAATSLSVMTLIINYVKFIISFIFKSARSFIICYTCKISSHLLKNCSQNKINTSAS
Ga0272435_10001879F028667N/AMILLXLALDQSLTVDKCSSTTLLSTCRRYEIIYFVYSENSQEILXITFIKTHLQIYSNLSNQSLNLTTIKSTLIFLTMTHDSESVESXTAYLLRSIASRRVFLISVDASARSQNVATSXNINISQQLRQXAIDQSDEIIKMLIKLRDQRNMTLKLNKQXIDVQVNHTKRLNELEINQITIDTQEETIIELXEKVLSLKKKQRSANQLRSHQSTKSLLHQSIKNHTRRESFTLFDNDHHKFFKFSNSFIFTDEDESTXNSXRVKINDKLQTNVDHFDNENICIVYVISRLEDDAAEHIFAXHXHDASHSYISIDELFEHLKEIYDELNRNRKCRREYNALRQTNKSFNVFYFDFMKLFSYLNYDNRTLMNDLQNKINNRLQNALSICSENFTSLTRLRIFLQSVNNKQRVNYQLRSERCTVIITVIIKVTIVSDKCAATSLSVTTLIIDYVKSTIFSISESVRSSIVCYICKISDHLFKNCSQNKINISTSHAFIFRLHEIIILKNKENKKISSSSKNSKAKN
Ga0272435_100018791F036035N/AMKDDAMQREHHELEKASKNHEHNNNDHLNDTFDKHTESISDCDIIKESDERERK
Ga0272435_100018793F094622N/AMSASKQRVYLNDSNSKNDVTMIMMRMNXKLNKRLKELTLTITHHDELKKLVVRMKHLADVVTVNQECHEKIYKVYSDSQTSLKTMKVMISTKDQTHL
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