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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031447 Open in IMG/M |
| Scaffold ID | Ga0272435_1000201 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 109909 |
| Total Scaffold Genes | 105 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (20.00%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (11.11%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.7 | Long. (o) | 159.2 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002432 | Metagenome | 559 | Y |
| F003820 | Metagenome | 466 | Y |
| F007840 | Metagenome | 343 | Y |
| F024448 | Metagenome | 205 | Y |
| F037509 | Metagenome | 167 | Y |
| F057010 | Metagenome | 136 | N |
| F057011 | Metagenome | 136 | Y |
| F070712 | Metagenome | 122 | Y |
| F091080 | Metagenome | 107 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272435_100020112 | F037509 | N/A | MILILLLIQIHSIDNKMSIKKFVYLMINDIERQYNIKKSIESMRTYNHMIARKFITQSVVLV |
| Ga0272435_100020117 | F091080 | N/A | MIDVYKAYVIDFQSEISSYNQINFDFDSNIDXISKHLYNFDIKDSSMKVMSVTSIFIRARNLNIFFKLLKMMLTVNDLKLNESSNMLMKQNMSISLLITTLMKINRFSNSQ |
| Ga0272435_100020125 | F070712 | GAG | MKNIKEKKFLIKIRKQVIFAEKXDSLNFYRKIEVTIFINHSKSCDAILINVKDIDLQAEICFICHKSNHTFKECFDRSRINALKDDKFNXFTLNSEFNSDSKN |
| Ga0272435_100020126 | F057011 | N/A | LIYIELXVQFXFKKLTIFFRIIKEIEIISLCSQIKVLLKENYFEKSFLINVSFISQSNSFSLRSLINSDFIIYMLIHDKLVNKVCQKLEIQSISLAKEKLIRDYDEKLARKTITYKILLNLTIESHKKLTMSMLIADIKHHEAILSKLXMNKNEILLNMKHDTIIFSDQLNISILIFSILLNTKHSSXSXLTSIFSAAHSNVFKMLKHLISFIQKESFSI |
| Ga0272435_100020130 | F002432 | N/A | MQNDXAKXLSMIEFSKNFNIFSIILMTLFYFNKSFHSRMSFNSDTTDYKTTYEHLEARKADNIIIXMKELLIFNHQQLKKMKQIIKAQINKHKRDVIYEVNDXVXLFFRNIKTTRSCKDLKDKQLELYQITVKVEIFYHFHLLISMKHLHLMFSSKLLQSYSENSLSEQHSESLRLITIKDDEY |
| Ga0272435_100020135 | F057010 | N/A | MTLPSIVEHRSSLDFFLLKTLVQFNLFFLIFRLFKERFEASFFIVEDNDSFAEIITSSMIMKALKKRCEELKARLQAREIISSSSIYSERSRSQKILDSSLFTDEKNSIXKNXYEKVQNKLKINVDLFSSERVKLSYVHFRLFNDAAEITQSRRERDCFNSYKIVDELLKELAQLFDDSDKEVNFRRNYYNLIQEQKKFSEFYTQFQRLFFYLDYQEKQLIVDLKNKINSRLRFAXITQLIQLSTLKEIRFYLIRLNNDQRAIREIKNREAMIKAQTTKQIIFAEESVKATRRIIETKMTDQSKSRDAVLTNVKENDLLIENCFLCHKSDHTSKECSNRSFRINALDDEFDHSLNFDSESDSKN |
| Ga0272435_100020136 | F007840 | N/A | MIDAIERQNNTRKSIKSTARLIELLDDLQLIKYASFTSINRISDKESLLIARESNRSRESINSQIKQQKXLYLLLSSIALRSISFF |
| Ga0272435_10002018 | F003820 | N/A | MKLFNYLNYDDCILMNNLQNKINNCLQNALSVCSENFTSLICLRIFLQDVNNKQRVNYQLRSQLHTVIVKVTVVSDKCIATSLSAVMTSIIEYVKLTIFSTFELIRSFIVCYICKISDHLFKNCFQNKINTSASCIFIFHLHEIIISKNKLNEKMSSFKNSEAKN |
| Ga0272435_10002019 | F024448 | N/A | MKEMLISSMMSMSDDSFASESLTTEYVLSSNEVNYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIQEFDDHYAKKLITHVIYLNLTVQDHTIDTASMLITRLDQHQMIFKKTXMIKINLVIDMQIDSLQFSNFTLNSKSIVLFISNKTIMKQKSLTSTHILKRSFITSQLSLKSFSFNFR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |