Scaffold Ga0272435

Basic Information
Taxon OID	3300031447 Open in IMG/M
Scaffold ID	Ga0272435_1000204 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031447 Open in IMG/M

Scaffold ID

Ga0272435_1000204 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	109594
Total Scaffold Genes	112 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	29 (25.89%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (12.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

109594

Total Scaffold Genes

112 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

29 (25.89%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (12.50%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.7	Long. (^o)	159.2	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.7

Long. (^o)

159.2

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004755	Metagenome	424	Y
F007840	Metagenome	343	Y
F024448	Metagenome	205	Y
F028667	Metagenome	190	Y
F032884	Metagenome	178	Y
F039410	Metagenome	163	Y
F051591	Metagenome	143	Y
F057010	Metagenome	136	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_1000204108	F004755	N/A	LKELAQLFNDLNKKVNFRREYYNLIQEFKKFNEFYTQFQRLSFYLDYHEKQLIIDLKDKINLRLXFIXVNQLVQSDSLKEIRFYLIHLNNDQQVIQEIKNKLKCINDLSKTIFHKATVVTQSVNHSKSDQLKSRDAILTSVKEVDVLVETCFICHKSDHSSKECLNQSTRINAVNKEYDCFDFNFNFDFNSKN
Ga0272435_1000204109	F039410	AGCAG	MSFKFXVVSSIEETFKAFKLHXVLYVIFLLMFIMNRAKTSILFFFKQFNNVLNEATFMLXIENDSFXAVIEMSHLSIVEILVXVIEESEVDRDQLECFELSEIEKIKIKVFNXFEKTMTSFCIFSNISFLFIQSLLNMTSXXSISTINIDTVNFL
Ga0272435_100020452	F028667	N/A	MCRXYKIIYFIYSENSQEILQITFIKTHLQIYQIYLSIFLTMTRDFESVKSXTAHLLRSTASRRVFIISFDVSAESQNVTTSXDINMSQQLRQXVHDQLNEIIKMLIELRDQXNMTLKLNEQXIIVQVEHDKRLNQLEIKQMIIDALEETNKRYQEKMLNLKNKLKEVLHSTNQSRSHQSTESQVSTKSLSRQSIENHTXHESFTLFDNDHHKSFKFLNSFIFIDEDESTXDSXRIKINDKLQTNVDHFVDETICIVYVISRLEDDAAEHIFAXCCHDALHFYISIYKLLEHLEEIYDNQNKNXKCRREYNALRQADKLFNIFYFNFMKLFSYLEYDDCILMNDLQNKINNRLQNALSICLKDFITLHCLKSFLQNVNNRQRVNYQLXSERCMIIVKVTVVSDKCAATSLSAMMTLIVKYVKSTIFSTSKSVRSFIICYICKILDHLFKNCSQNKINTLTFHAFISRLHEIVILKNKENKKMSFKNSEAKN
Ga0272435_100020453	F024448	N/A	MKEMLISSMMSMSDDSFASESLTIECVLSSNKISYSLKLLIDIEAADYSFIDEVIVQIVCDQLQIKSLTLIKAKSIQEFDNHYAKKLIIHIIYSNLTVQDHMIDTASMLITQLNQHQMILEKTXMNKIDLVIDMQIDFLXFSNFILNLKSIVLLTSNKIITKQKSLTSTHILKRSFTTSQLSLKSFSFSQFNEKSVKLIEQSKSRDAVLFSINFKSTFSLKPAFSSMNISMIETAVYRMLVK
Ga0272435_100020467	F007840	N/A	MIDAIERQNNTREFIESTARLIELLDDLQLIKYTSFISINRISDKESSLIARESNRSRELINSQIKQQKXLHLLLSSIALRSISFF
Ga0272435_100020468	F057010	N/A	MTSSFIVEHRSSLDFFLLKHSFNSISSFFFIMSRLFKERFEASFFIVKDNDSFAEIITSSMTMKALKKRCEELKARLQAREITSSSSIYSERSRFQKILDSSLFTDEKNSIXKNXYEKVQNKLKINVDLFSSKRVKLSYVHFRLFDDAAEITQSRRERDCFNSYKIVDELLKELAQLFDDSDKEVNFRRNYYNLIQEQKKFSEFYTQFQRLFFYLDYQEKQLIIDLKNKINFRLRFAXVTQLIQLSTLKEIRFYLIQLNNDQRAIXEIKNREAMIKAXTTKQIIFVEESVKATRRIIEMKMTDQSKSRDAVLTNVKENDLLIENCFLCHKSDHTSKECLNRSFRINALDDEFDHSLNFDSESDSKN
Ga0272435_100020483	F032884	N/A	LNYDEKMTIRNERVEREKCEETKKNENMMMRIEXKCLYMQTIDVINQXEDIKQQLXSDYM
Ga0272435_100020485	F051591	N/A	MLDTIALYFRYQSSHVISLRIVTTDLNLLSCASRKGKTDSNLIRNAVLLXNNVVLCAIFKHKRIXFRFLHQYAVFCAVLKSIDDLFFSCEFALRFINQITVXIDDSFFCVDEVSFRRRFXPAXAQKISIFDFRLATQSSVKLLSRMKACFDHTIVLYNLSIDLIYHMLQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272435_1000204

Overview

Ecosystem & Geography

Associated Families

Sequences