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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031447 Open in IMG/M |
| Scaffold ID | Ga0272435_1000205 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 109541 |
| Total Scaffold Genes | 123 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 36 (29.27%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (25.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.7 | Long. (o) | 159.2 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002432 | Metagenome | 559 | Y |
| F006206 | Metagenome | 378 | Y |
| F007840 | Metagenome | 343 | Y |
| F026450 | Metagenome | 197 | Y |
| F028367 | Metagenome | 191 | Y |
| F039410 | Metagenome | 163 | Y |
| F042102 | Metagenome | 158 | Y |
| F069514 | Metagenome | 123 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272435_10002052 | F028367 | N/A | VKIISLCNLDEILSKENYFDKLFLVNALLISQNESFSLRSLIDNDSIIYMIIHINLVNKVCKELKIQFISLTKEKLIKEYDEKIFKKTITHKILSNLIIESHKKLTVSMLIADINHHEVILEKLXMNKNEILLNMQIDIIIFSNQLNTFISIFSISFNSKHSS |
| Ga0272435_100020535 | F006206 | GAG | MYALRTCYVRTYFIFNNYFDKSFLVDALLILQNESFSLRSLIDSDSVIYTIIHINLVDRVCKELRIQSISLTKEKLIKEYDEKISKKTITHKILLNLIIESHKKLTVSMLIADINHHKVILEKS |
| Ga0272435_100020543 | F069514 | N/A | MQNDXAKLLLIIKFVNNNALFSVIFSISFFLNKDFHSHMSFELDTIEYESFRECLQAIKVENISEHMNKILMFAREFLVKTRKQMI |
| Ga0272435_100020555 | F042102 | AGAAG | MNALLFDHEMIKISINTKLNAXISAHEAGDIVAFIKYMCQQHDIEIETHNDMIQMLEDVNEANITLKITQTRLQKENRNKNVIIHHLEAASSRQSTSISEGXFSKSIKLLDSLLFEDSTQNVDNXLSRMRNKLKTNKNHFPIKELKIAYIESXVSEAAIKHIASRMRNIFLNSFLEVEEVLSIINKMYDDLNRRHTTQRQYLRLYQNKIFFHEFXMKFQRFSAELEYNNETLLNDLQHKISSDLQRVTLNERITNLNEFVDICMRVDVRLTELNARSVVKASATQAARSVFNTSTARLTSSVSSXKKLRKSNLDSIQKELFKKELCFKCKKSEHRAYDCLETTQVHEIAANSKNDLLSSK |
| Ga0272435_100020558 | F007840 | N/A | MINAIERQNNTRKSIESTARLIELLNDLQLIKYTLFISINRISDKESSLIARESNRSRELINSQIKQQKXLHLLLSSIVRSISFF |
| Ga0272435_100020559 | F026450 | N/A | MFRLFKERFEASFFIVKDNDSFAEIITSSMTMKALKKRCKELKAMLQAREIISSSSIYFERSRFQKILDSSLFTDEKNSIXENXYETVQNKLKINVDLFSSERVKLSYVHFRLFDDVAEITQSRCERDCINSYKIVDELLKELAQLFDDSNKEVNFHRDYYNLIQEQKKFSEFYTQF |
| Ga0272435_100020575 | F002432 | N/A | MSFDSNMTDYETTREXLEARKTDNIVIXMKELLSFDHQQLKKTKLIIEVQINKHRXDVTYKVNDXVXLSFRNIKTTRLCKDLKDKQLDLYQITAKIDIFYHLHLSVSMKHLHSIFSSKLLQSYSKDSLSEQHSESLRLITIEDDEHXKIDDILNFRRYQDQIQYKVKXKDLDKDDEXYYVNKEKFNDSEKVLNEFHKLYSSKSR |
| Ga0272435_100020582 | F039410 | N/A | MFIMNKAKTLILFFFEXFNNVLNEVMFMLXIENDSFXTMIETSRLSIVEILIXMIEESKVDRDQLECLKLSEIEKIKIEVFNXFEKTMTLFCIFSNISFLFIQSLLNMTLXXLISTINIDTVNFLXLSMMRLSRILXVIIFLNIFSS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |