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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031447 Open in IMG/M |
| Scaffold ID | Ga0272435_1000206 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 109503 |
| Total Scaffold Genes | 109 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 34 (31.19%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.7 | Long. (o) | 159.2 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007840 | Metagenome | 343 | Y |
| F033266 | Metagenome | 177 | Y |
| F038484 | Metagenome | 165 | Y |
| F039410 | Metagenome | 163 | Y |
| F055317 | Metagenome | 138 | Y |
| F061400 | Metagenome | 131 | Y |
| F078020 | Metagenome | 116 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272435_100020665 | F039410 | N/A | MSFKFXVISLIEKTFKAFKLHXVLYAIFLLMFIMNRAKTLILFFFERFNSVLNEAMFMLXIKNDFFXAVIEINRLSIIEVLVXVIEENKVDRDQLECFELSEIEKIEIEVFNXFEKTMTSFRIFSNISFLFIQSLLNMTSXXLILTININTVNFLXLLMMRLNRILXVIVFLDIFSS |
| Ga0272435_100020667 | F033266 | N/A | MLSHSFTEERSEEFRNRFFQISDADSSKSRMKSLSAASFIHEDDESFAETIISFVFYEIXKTRSLVLDKETDRLYKLNKQQEDEIKELKTRLQTKENTSSDFIYSERSKSQKIPDSSLFTDEKNST |
| Ga0272435_100020677 | F078020 | N/A | MRFFFDRLINAXKDAVLILNIKKFFFEAVEASCXSTLRTELIEEFDDHDHFECEALTDIKKTEMKAFNXFKKTMTSFCISSSISFLFIQNFSNMTSXXSISAINIETVNFLXLSIVRLNRILXIMIFFVSFSSYSLINFSLASHMSXISSFXHIXSTNFVXIKM |
| Ga0272435_100020680 | F007840 | N/A | MINVIERQNNTRKSIESTAKLIELLDDLQLIKYASFISINRISDKESSLIARESNRSRESINFQIKQQKQLYLLLLSIALRSISFF |
| Ga0272435_100020682 | F055317 | N/A | MKQRDKSEIQQLKAKLQAFNAITVNVIIIAFSIIIYFKXSKYHKILDSSMFIDEKNSTXENXFLDIREKLTINVDIFSNELYKLSYIHSRLADDIVEVTQVRCNLNCNNLYLTVNELLEKLAQSFHDSDKKDNYRRKYINLIQKSKKFSNFFNQFQRLYIYLKYQKNVLVIDLKNKINSRLXIFXTAQMKSLIKLSDIQNYLIRLNNEHKAVREIKNKLLKHDDSKIIISRVIIAVQSSTLKSDXSKSRSAVLTSIKNANVLVEICFVCLFQTCLNRSEFRSNSNQFD |
| Ga0272435_100020684 | F038484 | N/A | MCIAKVLSAFXRSSCIFIILLLRCNLCAEIALMFATRSLYFFHRXFHXSLXYCVIAMLSLVEIIVKKRMHHLHLNCIFAFSXMKTFRSIIFLMMSNXEMTXITFVKXTCISLHAYLISYVQLLIQLCNVILFYNMFKXTCSELIYVFVSKVLMLTLLNISVTXCRVXFXSVSNLHSLLNSSFFLSRXCQTDASNAISDLITIEYTCFAFVKIASHVKTLRQLSVSIFVMXFVFIYQICTSHCSFMFSCIFRTCTFNFNLITELSIYMLIIMSNLFNFLVKCVSLLKIYCIHCMQHT |
| Ga0272435_100020693 | F061400 | GAG | MTLESVEQIMLLKYYNHIMNLNSEKTIIKAXNIYCREKDEDNAINESDDFFKTDLQNVLCFINV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |