Scaffold Ga0272435

Basic Information
Taxon OID	3300031447 Open in IMG/M
Scaffold ID	Ga0272435_1000211 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031447 Open in IMG/M

Scaffold ID

Ga0272435_1000211 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	107333
Total Scaffold Genes	108 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (25.93%)
Novel Protein Genes	14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (35.71%)
Associated Families	13

Scaffold Components

Scaffold Length (bps)

107333

Total Scaffold Genes

108 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

28 (25.93%)

Novel Protein Genes

14 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (35.71%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.7	Long. (^o)	159.2	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.7

Long. (^o)

159.2

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004755	Metagenome	424	Y
F005901	Metagenome	386	Y
F006206	Metagenome	378	Y
F007840	Metagenome	343	Y
F018839	Metagenome	232	Y
F033266	Metagenome	177	Y
F037509	Metagenome	167	Y
F039410	Metagenome	163	Y
F044226	Metagenome	154	Y
F046102	Metagenome	151	Y
F070712	Metagenome	122	Y
F087978	Metagenome	109	Y
F096307	Metagenome	104	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100021110	F033266	N/A	MFSHSFTEEHSEKFXTYFFQISDVDSSKQSSAASFIHENDELFIETIIFLMFYEIXKTXSLALDKETDQLYKLNKQRKDEIKELKTRLQDKENTSSDFIYFKRSRFQKYLILRCLLMKRILLERTDTKKFRIN
Ga0272435_100021115	F039410	GAG	MFKLHXVLYAIFLLMFIMNKAKTLILFFFEXFNNVLNEAMFMLXIKNDSFXAVIETSHLSIVKILVXVIEESKVDHDQLKCFELSEIEKIKIKVFNXFKKTMTSFCIFSNISFLFIQSLLNMTLXXLISTINIDTVNFLXLSMMRLNRILXVMIFLNIFSS
Ga0272435_100021119	F087978	N/A	MCSSKLLXSYSEDSLSEQHSESLRSITIKNDEHXKINDILNFRHYQDQIQYKVKXKDLDRNDEXYYVDKKEFNNSEKVLNEFYKLYSSKSR
Ga0272435_100021120	F037509	N/A	MILISILIQIHSTDNKTSIKKFVYLMIDNIERQNNIKKSIELMKTYDHVIARESIAQSVASV
Ga0272435_100021122	F070712	GAG	MNDIKEKKFLIKVRKQVIFAEKXDSLNLYRKIKVTTLVNHSKLHDVILTNVKNIDLQAEICFICHKSDHTSREYSDQSKVNALEDDEFDQFTLNSEFNSDSKN
Ga0272435_100021128	F096307	AGAAG	MLYIVVTQINVSLKEDMLKHKKDVDLKDVYDTKKCVCHRNLLINRNTKKCVYLENNRSXLEDAKEEKKCXVISESSLSQI
Ga0272435_100021136	F046102	GAG	VTFIKDAMKDVLISSTTSSSNDLFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIREFDDHYAKKLITHAIYLNLTVQDHMKRFVFMLITRLSQHQMILEKTXINKIEITIDMRNNHLQFSDSKTHIDASLISLSVIKKIAIEQKSSISI
Ga0272435_100021137	F018839	N/A	MMIAKVVTFDHLTSDLYAAVSIIAMFIELKDEAKLTELNDFTILLNEDDFSLSXMMTEEIDLFSI
Ga0272435_100021140	F087978	N/A	MFSSKLLXSYSEDFLSEQHSESLRSITIKNDEHXKIDDILNFRHYQDQIQYKVKXKDLDRNDEXYYVDKKEFNDSEKVLNEFYKLYSSKSR
Ga0272435_100021144	F004755	N/A	LKELTQLFNDSNKKVDFRREYYNLIQEFKKFNEFYTQFQRLSFYLNYHEKQLIVDLKDKINSHLXFVXINQLVQSDFLKEIHFYLIYLNNDQXVIQEIKNKLKCIDDISKTIFHKVTIVTQLVDHLKFDHLKLRDAILTNVKEADILVESCFIXHKSDHSFKKCLDQSTRINAVNKKYDXFNFDSNFDSKN
Ga0272435_100021149	F005901	N/A	LHSYISIYELFEHLKEIYDDQNKNRKCHRKYNALRQAEKSFNVFYFNFMKLFSYLEYDDCTLMNNLQNKINNRLQNVLSICSKDFITLHRLKSFLQSVNNKQQVNYQLRSKRCTIIVKVIVASEKRATFLSAVTTSIIEYIKSTIFSTSESVRLSIVCYICKILNHLSKNCSQNKVNTSAFQAFISRLHEIIISKNKKNEKMSSFEDSEAKN
Ga0272435_100021155	F006206	N/A	VKIISLCNLDEILSKENYFDKLFLVDALLILQNKSFSLRSLIDSDSIIYMIIHINLVNRVCKELRIQFISLTKEKLIKEYDEKIFKKTIIHKILLNLIIESHKKLTVSILIIDIDHHEVILEKSXMNKNEILLNMQINIIVFSN
Ga0272435_100021166	F007840	N/A	MIDAIERQNNTRKSIESTARLIELLDDLQLIKYASFILINRISDKESSLIARESNRSRESINLQIKQQKXLHLLLSSIAIRSIPSF
Ga0272435_10002118	F044226	GAG	MIEFSDNVNTFLIISMIFFYFNKEFHSXMSFDSDTTDYEITCEQIEVRKADDIII

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272435_1000211

Overview

Ecosystem & Geography

Associated Families

Sequences