Scaffold Ga0272435

Basic Information
Taxon OID	3300031447 Open in IMG/M
Scaffold ID	Ga0272435_1000215 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	106350
Total Scaffold Genes	106 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (21.70%)
Novel Protein Genes	20 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (10.00%)
Associated Families	19

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.7	Long. (^o)	159.2	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F003820	Metagenome	466	Y
F007840	Metagenome	343	Y
F008169	Metagenome	337	Y
F009580	Metagenome	315	Y
F011463	Metagenome	290	Y
F025887	Metagenome	199	Y
F036504	Metagenome	169	Y
F038010	Metagenome	166	N
F039410	Metagenome	163	Y
F044226	Metagenome	154	Y
F055317	Metagenome	138	Y
F057010	Metagenome	136	N
F066295	Metagenome	126	Y
F070711	Metagenome	122	Y
F078020	Metagenome	116	Y
F079402	Metagenome	115	Y
F081945	Metagenome	113	Y
F087980	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_1000215100	F087980	N/A	MKSSHNFSIDDEHAVEQFAQSVIENLVETFRAMQELQNQVRQHDVIILFSFIVFSSSVYIELNSQSLAMIAEIVAQILNNQSSFIIHLSANSVAVIIAFRFKKLLDISEYERNKD
Ga0272435_1000215101	F039410	AGTAG	MKEMFRAFKLHXVLYAISLSIFFMNRVNTSVXFFFEXFNNVLNEAMSMLXIVNDSFXIVVETDRLSILEIFDXEIKVNEVDRDQLECFELREIEKIEMKVSNXFEKMMTSIRIFSNISFLFIHDFSNMTSXXLMSAINIETVNFLXLLMMRFDRILXVIVFLNIFSLYSFINFSFVSDIDXIFSSLHTLSTRLICMIV
Ga0272435_1000215102	F055317	N/A	MFTDKKNSTXKNXSLDIREKLAININIFSNELYKLSYINFRLADDVVEITQVRCNLNCDNLYLTVNELLEKLAQSFHDSDKKDNYRREYINLIQESKKFSDFFNQFQRLYIYLKYQKNVLVIDLKNKINSRLQIFXTAQMKSLIKLSDIQNYLIRLNNEHRAVREIKNKLLKHDDSKIIISRATIAVQSSTSKSDXSKSRSAVLTNVKNADVLVEICFVCHKSDHSFRECLNQSIKVNAVDENYDRFKLDTESEFESKN
Ga0272435_1000215104	F038010	N/A	MNNDHLVLSDNLESNKINVNLSVLIDIDVIDYAFIDDSFAQEYSLLCFSLSEICILQKFDDQSVVFNSITHYVLVKLXVSSKKLEETLFYVT
Ga0272435_100021550	F011463	N/A	MKLIIEVQINKHKRDITYEVNDXVXLSFKNVKTTRLCKDLKDKQLNIYQITAKMNTFYHFCLSISMKHLHLMFSSKLLXLYSEDSLSEQHSESLRSIIIENDEHXKIDDILNFRRYQDXIQYKVKXKNLDRDNEXYYVDKEKFDDSEKVLNEFHKLYSSKSR
Ga0272435_100021551	F044226	GAG	MIEFNDNFNIFLITSMILFYLNKEFHFQISFNSDTTDYKMTHERLETKKTNDIVIXMKELLSFDHQ
Ga0272435_100021557	F078020	N/A	MTKISMQFFFDRLINAXKDSAFTLNIEKFFFEAVEADHXSTLKTELIEEFDDRDHFECEALTDIEKTEMKASNXFEKTMTSFCISSSISFLFIQNFSNMTSXXFISAINIETVNFLXLSTVRLSRILXVIIFFVSFSSYSLINFSLASHMNXISSFXHIXSTSFVXIKM
Ga0272435_100021558	F057010	N/A	MSCLFKECFEASLFIVEDNDSFAEIITSSMTMKALKKRCKELKVKLQAREITSSSSIYSERSRFQKILDSFLFTDEKNSIXKNXYEKVQNKLKINVDLFSSERVKLSYIHFRLFNDAAEIIQSRREHDCFNLYKIVDELLKELAQLFNDSDKEVNFRRNYYNLIQEQKKFSKFYTQFQRLFFYLDYQEKQLIVDLKNKINFRLXFAXVTQLIQLSTLKEIRFYLIRLNNDQRAIQEIKNREAMIKAQTTKQIIFAEESVKATRRIIEMKMTDQSKSRDAVLTNVKENDLLIENCFLCHKSDHTSKECLNRSFRINTLDDEFDHSLNFNSESDSKN
Ga0272435_100021559	F007840	N/A	MIDAIKRQNNTRKSIESTAKLIELLDDLQLIKYASFISINRISDKESSLIARESNRSRESINLQIKQQKRLYLLLLSIVLRSISFF
Ga0272435_100021560	F066295	N/A	MFYEIXKAQSLVLDKETDXLYELNKQQEDEIKELKTKLQTKENTSSDFIYSERSRSQKISDSLLFTNEKNSTXNNXYEKIQNKLEINVDLFFNEXVKLSYIHSRLFNDAAESTQTRCKRDCVNFYRIVEDLLKELAQLFDDSNKKVNFHRKYYNLIQESKKFSEFYTQFQXLSFYSDYHEKQLIIDLKDKIHLHLRFIXIDQLVQLLQTCLNRSEFRFNSNQFD
Ga0272435_100021561	F081945	N/A	MFNHSSIEEHSEEFQNHFSYIFDVDFLKSRMKSSSAASFIHEDDE
Ga0272435_100021572	F070711	N/A	MKDVLISSTMSMSDNSFTSESLITKCVFSSNEISYSLKSLIDIEAADYSFIDEVIAQIVC
Ga0272435_100021579	F036504	N/A	MFCQEIQSVEHXVNQKETSLISEVDQCFQSSXESFTLFDNENDHHKSIKFSNSSIFIDTDESTXKSXIIKISDKLDINANHYSIEKFCIVYVTFRLDDDADEQIYAKHCINAFSFYLSLMKLLKHLNEIYDDQNRDXKCHCKYNALKQSNKLFSFFYFEFIKIFNFLDYNNQTLRNDLQNKINNHFQNALSVYLIKFSSLDKLKTFLQRVNNKQXVNYQLRDEQXTVKSIAASKKRFVSSLTSASISTTSYVQFTTFFILESEXSRMSIICFNCKVSSHLSKNCSQLKTSTLTSHAFISRLNEIIMSKEEKKLFTKKSKNETKN
Ga0272435_100021581	F079402	N/A	MRNKLKMNKNHFSIEEIKIAYVKSRVSEMMIKHIAFRMRNMIMNSFLEAEEILSIINKMYDDFN
Ga0272435_100021582	F025887	N/A	MSDDSFDFKSFTVDIILNNLEKIFKFFALINIKVIDMIFIDEFLMSELCECFDIQSILLSKSKLI
Ga0272435_100021586	F000597	N/A	MKDVLISSTMSMSDDSFASESLTIECVLSSNEINYSLKSLIDIKAADYLFIDEVIAQIVCDQLQIESLTLIKVKSIREFDNHYAKKFITHVIYLNLTVQDHTIDTTSMLITRLDQH
Ga0272435_100021587	F003820	N/A	MKLFSYLDYDDCILMNDLQNKINNRLQNALSVCSENFTSLTRLRIFLQDVNNKQRVNYQLRSQLRTVIIKVTVVSDKRADTSLSAVTTSIIEYVKLTIFSISESVRSSIVCYICKISDHLFKNCSQNKINTSTFHAFTLRLHEIIISKNKENEKMSSFSKNSETKN
Ga0272435_100021592	F008169	N/A	MFYEIXKTXSLVLDKETDXLYELDKQQEDEIKKLKIRLQTKENTSSDFIYSEHSRSQKTFDSSLFTDEKNSTXENXYKKIQNKLEINVDLFSNERVKLSYVHSRLFNDATEITQARREHDCVNLYKIVEDLLKELAQLFDDSNKKVNFRRKYYNLIQESKKFSEFYTQFQRLSFYLDYHEKQLIVDLKDKIHSRLRFIXVDQLVQSDFLKEIRFYLIHLNNDQRVIREIKNKLKCINDVSKTIFHRTTVVTQSVNHLKSNHLKSRDAILTSIKEADILVESCFICHKSDHSSKKCLDRSTRISAVNKEYDCFDFDSNFDSKN
Ga0272435_100021593	F039410	N/A	MFIMNKAKTSILFFFEXFNNVLNEATFMLXIENDSFXAVIEMSRLSIVEVLVXMIEENEVDRDQLECFELSEIEKIEIEVFNXFEKTMTSFCIFSNISFLFIQSLLNMTSXXSISTINIDTVNFLXLSMMRLNRILXVIVFLDIFSS
Ga0272435_100021598	F009580	N/A	MKRLRLVDKMICIQISERDLAQKLNFSCEQRNFFIYTDDVIVVDVHDTQSEELLIXAFFNDFARMLQLAVVAQLSLVADFLDLRNDQSLILNDDNDKA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272435_1000215

Overview

Ecosystem & Geography

Associated Families

Sequences