NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1000252

Scaffold Ga0272435_1000252


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1000252 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)97829
Total Scaffold Genes128 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)68 (53.12%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065269Metagenome127Y
F079402Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_10002522F079402N/AMRNKLKMNKNHFSIEKMKIAYVKSQVSETTIKHIALRMRDMITNLFLEAEEILLIINKMYDDFN
Ga0272435_10002524F065269N/AMTRSTEVKSESVSMTRYETQDAERKSLLSQNQTASEEEDMNASLNIKEKNTNALLFNHEIIKISISTELNA

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