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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031447 Open in IMG/M |
| Scaffold ID | Ga0272435_1000259 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 96038 |
| Total Scaffold Genes | 87 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (21.84%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (12.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.7 | Long. (o) | 159.2 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F021216 | Metagenome | 219 | Y |
| F024448 | Metagenome | 205 | Y |
| F026450 | Metagenome | 197 | Y |
| F037509 | Metagenome | 167 | Y |
| F046102 | Metagenome | 151 | Y |
| F049323 | Metagenome | 146 | Y |
| F075493 | Metagenome | 118 | Y |
| F083460 | Metagenome | 112 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272435_10002593 | F049323 | N/A | MMKEMNEESAEQTRRSAENDSKECARFKLDIASXLALIKLIRVRSELXLIQTCS |
| Ga0272435_100025933 | F026450 | N/A | MFCLFKECFEASFFIVENNDSFAEIITSSMTMKALKKRCEELKARLQARKIISSSSIYSEHSRFQKILDSLLFTDEKNSIXKNXYEKVQNKLEINVNLFSSEQVKLSYVHFRLFNDATEITQSRRERDCFNSYKIVDELLKELAQLFNDSDKEVNFRRNYYNLIQEQKKFSEFYT |
| Ga0272435_100025951 | F075493 | N/A | MQSVQAMHEYMLRCLMTSFAVASXAIHVXNISRVQISIQIYALNSDVHCKSVFYFLKIIMHLYHLIAQMQSLCXDCIDVCDAFSVLFSSLISLILVILLYCDAIACXNHCEEESASSASXLYLCIFLNENIQKYYFLDDC |
| Ga0272435_100025954 | F046102 | N/A | MKDVLISSTTSSSNDLFVLKSLTTECVLSSNEISYSLKSLIDIEAADYSFIDELIAQNFYDHLQIESLSLIKLKSIRKFDDHYAKKFITHAIYLNLTVQDHMKRFASMLITRLSQHQMILEKTXMNKIEVTIDMRNDRLQFSDSKTHIDASSISLSVIKKIAIEQKSSTSTQILKRSISSVIT |
| Ga0272435_100025957 | F021216 | N/A | MKSRMKSNAMRREHHELEKAFRNHERSDNNHSNDTLNEHTKSISSCDVIKESDERERE |
| Ga0272435_100025963 | F037509 | N/A | MILISIFIQIHSTDNEMSIKKFMYLMINDIERQNNIKKLIKSMKTYNHMIAKESIAQSIASIQIN |
| Ga0272435_100025966 | F083460 | N/A | MKLSDSQAYSDALLELNASLIKYAMKHQLHELLNHHFNHEKSQDNSENDDENKAAEAV |
| Ga0272435_100025970 | F024448 | AGG | VTFIKDAMKKMLISSTISMSDDSFASESLTTECVLSSNEISYSLKSLINIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKLIQEFDDHYVKKLIIHVIYLNLTVQDHTIDTAFMLITRLDQHQMILEKTXMNKINLVIDMRIDFLXFSIFISNHKLIVLLTSNKTIMKQKSLTSTHILKRSFTTSQFSLKSLSFSQLN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |