NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1000271

Scaffold Ga0272435_1000271


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1000271 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)93552
Total Scaffold Genes90 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (15.56%)
Novel Protein Genes14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (7.14%)
Associated Families12

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F003820Metagenome466Y
F008115Metagenome338Y
F008169Metagenome337Y
F028367Metagenome191Y
F042102Metagenome158Y
F046102Metagenome151Y
F048017Metagenome148Y
F055317Metagenome138Y
F080688Metagenome114Y
F083460Metagenome112Y
F094622Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_100027110F008115N/AMNFITELFLSEDYNVICTIICCLIKEHHYVFCHXKDDDISVEEMIXIMLXNVYQLHDLFSSIVSNRDFQFISTMXKSLCKRLRITASLFTVYHSEINDQSKRVNQNVKCELRIYCNYMQNDXVKXISMMKFSDNFNIFSITLMTFFYFNKEFHLRMSFDSDTTDYETTRERLEARKADDIVIQMKELLSFDHQQLKKMKLIIEVQINKHRRNVTYEVDNXVXLSFRNVKTTRLCKDLKDKQLNLYQITAKIDIFYHLCLSVSMKHLHLIFSSKLLRSYSEDSLSEQHSESLRSIIIEDDEHXKIDDILNFRRYQGRIQYKVKXKDLDRDDEXYYVDKEKFNDSEKVLNEFHKLYSSKPR
Ga0272435_100027114F083460N/AMXLQMKSSNSEAYSDALFKLNASSIEYATRCXLYKLLNYCLNHEESQGNSENDDENEAAEAV
Ga0272435_100027127F042102N/AMTRSTESESVSIACYDFXNVKRESLLLQNQTASEEEDTNASSDTEKENMNALFFDHKMIKISISTELNAXISIHEADNIVAFIKYICQQHNIEIKIHNDMIQMLKDVNEINIMLKAAQTRLQKKMRDKNVIIHHLKTASSQQSTSIFEDCFLKLIKLLNFLLFEDSSQNVDNXLSRMQNKLKINKNYFSIEELKIVYIESXISEAAIKHIASCMQDIFLNSFLEVEEVLSIINKMYNDFNHHYMTQQQYLKLYQNKIFFHEFXMKFQRFSAELEYNNKTLLNDLQHKISSNLQRATLNEXITNLNEFIDICMQINVRLTELNIXSIIKVSVISAAHSVASTLSVQSTSSVSAXKKLRRLNLNSIQKELFQKELCFKCKKLKHRAYNYLKMT
Ga0272435_100027147F000597N/AMISMSDDSFTSESLIIECVLSSNEISYSLKSLINIEAADYSFIDEVIAQIVCDQLQIKSLTLIKAKSIREFNDHYAKKLIIHVICSNLTVQDHMIDTAFMLITXLNQH
Ga0272435_10002716F008169AGAAGLKTRFQTKENTSSDFIYSERSRSQKIPDSSLFTDEKNSTXKNXYEKIQNKLEINVDLFSNERVKLSYVHSRLFDDAAEITQARRERDCVNLYKIVKDLLKELAQLFDDLNKKVNFCRKYYNLIQESKKFSEFYTQFQRLFFYLDYHEKQLIVDLKDKIHSRLRFIXVDQLVQSDSLKEIRFYLIHLNNDQRVIREIKNKLKRVDDVSKTIFHKAIVVTQSVDHSKSDHLKSRDAILTSVKEANILVESCFVCHKSGHSSKKCLDRSTRISAVNKEYDRFDFDLNFDSKN
Ga0272435_100027161F080688N/AMYXIIHSDIHXSSSSEDLHEKQTAESTLSQLSEHSIEVQFSNHL
Ga0272435_100027163F028367N/AVKIISLCNLDKILLKENYFDKLFLVNALLILQNESFNLHSLINSDSVVYMIIHINLIDKVCKELKIQSISLTKKKLIKEYDEKIFKKTITHKILLNLIIESHKKLTVSMLIADINHHEVILEKSXMNKNEILLNMQIDVIVFSNQLNTLISIFSISLNSKHSS
Ga0272435_100027164F055317N/AMTFKNTSDKDKAFVDFLQQTRSQALSSIVDSQYAFSFIAFNESNAEIIILNDMKVXKKRIYALNKETDRLVEMKQQDKSEIQQLKAKLQAFTAITVNVIITAFLIIIYFERFKYHKILDSSMFIDEKNSTXKNXSLNIXKKLAININIFSKKLYKLSYINSRLADDIIEITQVRRDLNCDNLYLTINELLEKLAQSFHDSDKKDNYHREYINLIQESKKFSDFFNQFQRLYIYLKYQKNVLVINLKNKINSRLXIFXTAQIISLIKLSDIRNYLIRLNNEYKAVQEIKNKLLKHDDSKIIIFKAIIAVQSSALKSDXSKSRNAVLTNVKNADVLVEICFIYHKSDHSFKEYLNQSIKVNAVDENYDRFELNTESEFKSKN
Ga0272435_100027169F046102N/AMSSSNDLFASKSLTTECILSSNEISYSLKSLINIEAADYLFIDELIVQNVYDHLQIESLSLIKLKSIREFNDHYAKKLITHAIYLNLTVQDHMKRFVFTLITRLSQHQMILEKTXMNKIKMTIDMKDDHLQFSSFEAHIKDFIKAHSTVLSSKKIAIE
Ga0272435_100027171F003820N/AMNNFQNKINNCLQNALSVCSENFTSLTRLRIFLQDVNNKQRVNYQLCSQLCTVIIKVTVVSDKHAVTSLSAVMTSIIEYIKSTIFSTSESVKSSIICYICKISDHLFKNCFQNKIDTSTSCAFTSHLHEIIISKNEKNEKMSSFKDSEAKN
Ga0272435_100027173F080688N/AMFXTLMTXAEMHXTTHSDVHXSSDFENLFEKQTVESMTSQLSEHSIEVQLSNHL
Ga0272435_100027181F094622N/AMLKQRVYLNDSDSNDDVTAIMMKMNXELNKKLRESTLVITHHDELKELVAKMKHLANVVTVNQEYHEKIYKVYNDSQTSLKTVKVMISIKDQICLQXVQIAHESIXF
Ga0272435_100027189F000597N/AMKDVLISSTISMSNNSFASEFLTIKYVLSSNEISYSLKSLIDIKAADYSFIDKVIAQIVCDQLQIKSLTLIKAKSIQEFDDHYAKKLITHVIYSNLTVQDHMINTTFILIT
Ga0272435_10002719F048017N/AMSLAIISESAQRLEDRFQTILILNRVDVLPVESKANLYQQVCMINQTDEFCSEYKQAMNENKLKFHITKLKNCEIIDDVLFRKDLLXVSENMHTKLLQEVHDQSSISHFDNRRIIDLVQRFYYXSDHRATI
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