NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1000277

Scaffold Ga0272435_1000277


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1000277 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)91444
Total Scaffold Genes131 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)70 (53.44%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F001253Metagenome736Y
F013598Metagenome269Y
F021452Metagenome218Y
F032102Metagenome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_1000277106F021452N/AMSDNSFDFKSFTVDIILNSLEKIFRSLALINMKVTDMTFIDESLMSELCERFDIQSISLSKSKSIRLYDEISDRKLITYTLYTSIMIQEHKNEMMFLLITHLDQHKIIIENL
Ga0272435_1000277115F013598N/AMNFIINLSDSYDYNVILTVICRLLKERHYISCITDDEDITVEKTAEMLLQ
Ga0272435_1000277120F000597N/AMSDDSFASESLITECILSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHVIYSNLTVQDHTIHTASMLITRLDQHQMILEKT
Ga0272435_1000277124F001253GAGGVTFIKDAMKDVLISSTMSSSDDFFVSKSLTTECVLSSNEISYSLKSLIDIEAADYSFIDELIAQNVCDHLQIKSLSLIKLKSIRRFDDHYAKKLITHAIYSNLTVQDHMKRFVFMLITRLSQHQMILEKT
Ga0272435_1000277128F032102N/AMKIADLKKNIEKSIYKQILETNEIDENCTLLREAIARDETQYEDIKLKNCRTQNEILYHDSQL
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