NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272435_1000298

Scaffold Ga0272435_1000298


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1000298 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)87908
Total Scaffold Genes113 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)63 (55.75%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F003820Metagenome466Y
F013598Metagenome269Y
F036036Metagenome170Y
F069514Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_1000298100F003820N/AMKLFSYLEYNDCTLMNDLQNKINNRLQNILSICSKNFTSLTYLRIFLQDVNNKQRVNYQLRNQLCTVIIKVTVVSDKCIATSLSAVTTSIIEYIKSTIFSIFESVRSFIICYTCKILSHLFKNCFQNKINISASHAFTLRLHEIIISKNKENEKMSFKNSKTKN
Ga0272435_1000298101F000597N/AMSNDSFASESLITEYVLSSNEISYSLKSLIDIEAADYSFIDKVIAQIICDQLQIESLTLIKAKSIQEFDDHYVKKLITHVIYLNLTV
Ga0272435_1000298107F013598N/AMNFIIDLFDSYDYNAILTIICRLLKERHYISCIIDDEDITVEKTAEMLLQ
Ga0272435_1000298108F036036N/AMLVSLIYHLLSCFDQSFASEDQCLIHVIEYIFDSSDLQTFASAFILDDVRVKAHTRVKALVHEEENQ
Ga0272435_1000298113F069514N/AMIEFVNNNALFSVIFLISFFLNKDFYSCMSFELDVIKYESSCECLQMTKVENISEHINKTLKFARKSLVKTQE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.