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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031447 Open in IMG/M |
| Scaffold ID | Ga0272435_1000330 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 81246 |
| Total Scaffold Genes | 92 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (26.09%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.7 | Long. (o) | 159.2 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F021452 | Metagenome | 218 | Y |
| F025887 | Metagenome | 199 | Y |
| F037509 | Metagenome | 167 | Y |
| F057011 | Metagenome | 136 | Y |
| F065269 | Metagenome | 127 | Y |
| F069514 | Metagenome | 123 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272435_100033027 | F065269 | N/A | MTRSTELESELVSTTRYETRDAERESLLSQNXTASEEEGTNASLNIEEENINALLFNHEMIKISISTKLNA |
| Ga0272435_100033029 | F021452 | N/A | MPDDSFDFKSFTVDVILNSLEKIFKSFALIDTRVTDMTFIDESLMSELCERFDIQSISLSKSKLIESYDEISDRKLITHALYTSIMIQEHKNEMMSLLITRLD |
| Ga0272435_100033048 | F037509 | N/A | MILISIFIQIHLTDNKMSIKKFVYLMINNIERQNNIKKSIESTKTYDHVIAKEYIAQSVASVQIN |
| Ga0272435_100033049 | F057011 | GAG | LNFESQCIKRXXVXSIYIELXVXFXFKKLTISFRIIEEIKIIFLCSQIKVLLKENYFEKSFLINASFISQSNSFSLRSLINSDFIVYMLIHDKLVNKIYQKLEIQFILLAKEKLIXDYDEKLVRKTITHKILLNLMIESHKKLTMSMLIVDIEHHEDEVILSKL |
| Ga0272435_100033051 | F065269 | N/A | MSIAHYDFQNVRRESLLSQNQTASEEEDINVSSDTEEKNMNILFFDHEIIKISISTELNA |
| Ga0272435_100033054 | F025887 | N/A | MSNDSFDFKSFIVDVILSSLEKIFKSFTLINTEVIDMTFIDESLMSELCECFNIQSISLSKLKLIXLYNEISDQKLITHALYTSIMI |
| Ga0272435_100033079 | F069514 | N/A | MQNDXAKLLLITEFVDNNALFSIIFLISFFLNKDFHSHMSFELDVIEYESSHECLQTTKVKNISEHMNKTLTFACEC |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |