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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031447 Open in IMG/M |
| Scaffold ID | Ga0272435_1000344 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 79105 |
| Total Scaffold Genes | 71 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (11.27%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (25.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.7 | Long. (o) | 159.2 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F002432 | Metagenome | 559 | Y |
| F003820 | Metagenome | 466 | Y |
| F010214 | Metagenome | 306 | Y |
| F029296 | Metagenome | 188 | Y |
| F048017 | Metagenome | 148 | Y |
| F064252 | Metagenome | 128 | Y |
| F096307 | Metagenome | 104 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272435_100034418 | F064252 | N/A | MKSLSHQSIKNHTXRKSFTLFNNDHHKSFKFLNSSVFIDEDKSTXNSXRIKMNDKLQTNVNHFNNENICIVYVIFRLEDDAAEHIFAQRXHDALHSYILINKLFEHLKEIYDKLNRNXKCCCKYNALRQADKSFNIFYFNFMKLFSYLDYDNCTLMNDLQNKINNRLQNALSICSKNFTSLTRLRIFLQSVNNKQRVNYQLRSERRTVIIKVMIISDKCTATSLSVTTLIIDYVKSIIFSISESARSFIICYTCKILSHLSKNCS |
| Ga0272435_100034421 | F002432 | N/A | MQNDXVKXISMMKFSDNFNIFSITSMIFFYFNKEFHSXMSFDSDTTDYKTTHERLEVRKTDNIVIQMKELLSFDYQQLKKMKLIIEVQINKHRXNVTYEVDDXVXLSFRNIKTMKLCKDLKDKQLDLYQITAKVNTFYHLHLSVSMKHLHSMFSSKLLRLYSEDLLSEQHSESLRSITIKDNEHXKIDDILNFRRYXGRIQYKVKXKDLDRNDEXYYVDKEKFDDSEKVLNEFHKLYSSKSR |
| Ga0272435_100034422 | F048017 | N/A | MSLADIFESTQRLEDHFQTILTSDRVDVLSVESEANLYQRVYMTNQTDKLCSKYRQAMNENKLKFHITKLKNCEIIDNVLFRKDLLXISENMHMKLLQEVHDQSSIFHLDNKXIIDLVQRFYYXSDHQATIQ |
| Ga0272435_100034435 | F010214 | GAG | VSVLFIYDTSSLLCSSLMIFYTTMFXFNSXFKDERCFLCIRDAHDCNICKVAFSHLMIVIHCAEKYVMKERCTRXKDRVXLYXVILFFSXFDLCHVDVEXIVSINMQLQSFNVXLXSMKENVFXLFSXALDFSCR |
| Ga0272435_100034447 | F029296 | N/A | MSELLIFNHQQLKKIKQITEAQMNKHKRDIIYEVDDQVXLVFENIKITRSCKDLKDKQLNLYSITVKVEIFYHLQLSRSMKHIHSVFSSKYLXSSSNDLLSEQHSELFRSMIIEENEEHXEVDNILNFRQYKERLQYKIKXIEINHDDEXYYVDKEKFDDLKKVLNEFHKLYLNKSH |
| Ga0272435_100034465 | F000597 | GAG | MISISDDSFASESLTTEYVLSSNEISYSLKSLIDIKAVDYLFINEVIAQIVCDQLQIKLLTLIKVKSIQEFNDHYAKKLITHAIYLNLTV |
| Ga0272435_100034466 | F003820 | N/A | MKLLSYLDYDDCILMNNLQNKINNHLQNALSVCFEDFASLHHLRIFLQDVNNKQRVNYQLRSQLHTVTVKVTIVSDKCVATSLSVMILIINYVKSTLSSISESARSFIICYTCKTSSHLFKNCFQNKINTSASCAFISRLHEIIISKNKKNEKMSSFKDSEAKN |
| Ga0272435_10003448 | F096307 | N/A | MLYIVVTQIDASLKEDVLKHKKDVDLKDVCNTKKCVCHRNLLITCNTKKCVYLEDNRSXLEDARKEKRCXVISESSLSQI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |