NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1000353

Scaffold Ga0272435_1000353


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1000353 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)78079
Total Scaffold Genes80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001253Metagenome736Y
F008735Metagenome328Y
F079402Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_100035321F001253GAGGVTFIKDMMKDVLISSIMSSSNDLFASKSLTTECVLFSNEISYTLKSLIDTEAVNYSFIDELIAQNVCDHLQIESLSLIKFKSIREFNDHYAKKLITHAIYSNLTVQDHMKRFVSMLITXLDKH
Ga0272435_100035325F079402N/AMNKNYFSIEEMKIVYVKSXVSETMIKHIALRIRNMITNSFLEAEEILSIMNKMYDNLN
Ga0272435_100035334F079402N/AMQNKLKMNKNHFSIEEMKIAYVKSXVSEMMIKHIALRMKNMIMNSFLEAEKILLILNKMYDDFNQHYMTQX
Ga0272435_10003534F008735N/AMKEIAIIIYVHALYQTLLSDIQSIFISLILKYIEKLFEFNENXDSNRVCREMNDERRLIVQDLCDDLKYCCKRLRIQLYINXRIENDEQEQDDNIMLSNLILKLLHCMKNLNXIFNHTLSELFNNTLIINXKIVRXLHLSERIIKXDFNVXKCCKKCRFFVMSKTRLN
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Institute for Fundamental Biomedical Research
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