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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031447 Open in IMG/M |
| Scaffold ID | Ga0272435_1000408 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 70176 |
| Total Scaffold Genes | 77 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (19.48%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (25.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.7 | Long. (o) | 159.2 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001253 | Metagenome | 736 | Y |
| F008115 | Metagenome | 338 | Y |
| F033266 | Metagenome | 177 | Y |
| F037509 | Metagenome | 167 | Y |
| F038484 | Metagenome | 165 | Y |
| F074202 | Metagenome | 119 | Y |
| F096307 | Metagenome | 104 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272435_100040821 | F008115 | N/A | MLXNVYXLHNLSSSIVSNRDSQFISIMXQSLCKRLRITTSLLTIYHSEIDDQSKXVNQDVERKLRIYCNYMQNDXAKXLSMMKFSENFNIFSIISMISFYFNKEFHLRMSFDSDTTDYKTIRERLEVRKVDDIVIXMKELLIFDHQQLKKTKQIIEAQINKHRRDVIYEVNDXVXLFSRNIKTTKSCKNLKDKQLKFYQITVKVEIFYHLHLSISMKQLHSMFSLKLLCSCLNNFLSEQHSESFRFLTIENDEHXKINNILNFRHYXDXI |
| Ga0272435_100040827 | F037509 | N/A | MILIFILIQIHSTDNETSIKKFVYLMINDIERQNNIKKSIKSMRIYDHVIARESIAQSVASVQIN |
| Ga0272435_100040828 | F096307 | N/A | MFYIVVTQIDASLKEDVLKHKKDVDLKDVYDTKKCVCYRNFLITRNTKKCVCLEDNRSXLKDAKEEKRCXVISESSLSQI |
| Ga0272435_100040829 | F038484 | N/A | MCIARVLSAFXKSSCIFIILLLRCNLCAEIALTSATYSLYFFHHXFHXFLXYCFIAILLLVEIIVKKRMHHLHLNCIFASSXMKTFRSIIFLIMSKREMTRLTFIKXACISLHVYLISYVQSLIQLCNMILFCSMFKXICSEFIYVSVFKVSMFTLLNTFATXRRVXFXSVSNLHSLLNSSFFLSRXCQTDASNAISDLTTAEYTYFTFVKIAFHVKTSRXLSVSILMTXFIFICXRYALHCNFMFSCIFKTHTSDFDLITELFIYMLVIMLNLFNFLVKCVSLYFSDANVAS |
| Ga0272435_100040843 | F074202 | N/A | MKTVDCKMNCKTIYMSFLLMSSCLLCSDNAFNLALFLNDDFFLKLVISKLRLRVETELNFKEEVILRCSFFTAKDDNLDSLFNLETATNFIKFLXFIIFCNDXLFFFNLFLSVKCDVTXSKXADVENQAFKSEVVVNLAVVDLAVIDLAIINFVVIDLAVLNNVDNENSLKFENLDCKDDMKRSTSSVSSFFSSDIVN |
| Ga0272435_100040858 | F001253 | GAG | VTFIKDMMKDVLISSTISSSDDFFALKSLITECVLFSNEISYSLKSLIDIEAADYSFINELIAQNVCNHLQIESLSLIKLKSIRRFNDHYTKKLITHAIYLNLTVQDYTIDTVSMLITQLNQHQIIFKKT |
| Ga0272435_100040873 | F033266 | N/A | MFSHLFTEEHSEEFRNRFFQISDTDSSKSLSAASFIHEDDELFTETIILLMFYKIXKTRSLALDEETDQLYKLNKQQEDEIKELKTKLQAKENTSSDFIYFKRSRLQKIPDSLLFTDEKNST |
| Ga0272435_100040876 | F001253 | GAG | VIFIKDVMKDVLISSTMSSSNNLFVLKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDYLQIKSLSLIKLKSIREFDDHYAKKLIIHAIYLNLTVQDHMKRFVSMLITXL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |