Scaffold Ga0272435

Basic Information
Taxon OID	3300031447 Open in IMG/M
Scaffold ID	Ga0272435_1000422 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031447 Open in IMG/M

Scaffold ID

Ga0272435_1000422 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	68838
Total Scaffold Genes	75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (13.33%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (37.50%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

68838

Total Scaffold Genes

75 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (13.33%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (37.50%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.7	Long. (^o)	159.2	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.7

Long. (^o)

159.2

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001253	Metagenome	736	Y
F013598	Metagenome	269	Y
F018839	Metagenome	232	Y
F025887	Metagenome	199	Y
F037509	Metagenome	167	Y
F046102	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100042213	F046102	GAGG	VTFIKDVMKDVLISSTMSSSNDLFVSKSLTTECILSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIRKFDDHYAKKLITHAIYLNLTVQDHMKRFVFILITXLSQHQMILEKTXMNKIKIMIDMRNDRLQFFDSKAHIDVSSILLSVIKKIAIEQKSSIST
Ga0272435_100042222	F018839	N/A	MMITKVVTFNHLTSDLYAAVFIIAMFIELKDEAKLIELNDFMILLNEDDFSLSXVTTEKINLFNI
Ga0272435_100042224	F001253	GAG	VTFIKDVMKDVLISSTMSSLNDFFASKSLTTECVLSSNEINYSLKSLIDTEAADYSFIDELIAQNVYDHLQIESLSLIKLKSIRRFNDYYAKKLIIYAIYLNLTV
Ga0272435_100042226	F037509	N/A	MILISLLIQINSTDNEMNIKKFMYLMINDIERQNNIKKSIESMRTYNHVIARESIAQSVASVQID
Ga0272435_100042247	F000597	N/A	MKDVLISLITSMSNNSFTSESLTIECVLSSNKINYSLKSLIDIEAADYLFIDEVITQIVCDQLQIKSLTLIKAKSIREFDDHYVKKLIIYIIYSNLTV
Ga0272435_100042254	F025887	N/A	MSDDSFNFKSFIVNIILSSLEKIFRFFALINTEITDMTFIDESLMSKLCEHFDIQSISLLKSKSIQLYDETSD
Ga0272435_100042268	F000597	GAG	MMKEMLISLMMSMSDDSFASESLTTEYVLSSNEISYSLKSLINIKAADYSFIDEVIAQIVYNQLQIEFLALIKAKSIQEFDDHYTKKLIIHVIYLNLTVQDHTIDTTSMLITRLN
Ga0272435_10004229	F013598	N/A	MNFIINLFDSSKYNAILMIICKLLKERHYISCITENEDITVKKTAEMLI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272435_1000422

Overview

Ecosystem & Geography

Associated Families

Sequences