Scaffold Ga0272435

Basic Information
Taxon OID	3300031447 Open in IMG/M
Scaffold ID	Ga0272435_1000445 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031447 Open in IMG/M

Scaffold ID

Ga0272435_1000445 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	66476
Total Scaffold Genes	65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (16.92%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

66476

Total Scaffold Genes

65 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (16.92%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.7	Long. (^o)	159.2	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.7

Long. (^o)

159.2

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F003820	Metagenome	466	Y
F004755	Metagenome	424	Y
F009377	Metagenome	318	Y
F028367	Metagenome	191	Y
F033266	Metagenome	177	Y
F055317	Metagenome	138	Y
F057010	Metagenome	136	N
F059496	Metagenome	133	Y
F070710	Metagenome	122	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100044523	F009377	N/A	MIRSTELESKSMSITCYELQNVERKSLLSQNXTASEEEDMNASLNTEEKNMNVLLFDHEMIKISISTELNAXINTHEADDLVAFIKYICQQHDIEIKIYNDMIQMLNDVNKINIELKAINIKLKVMQIMLNIVXMCLQKEMKKKNVIIHHLKVTSSQLSTLISKDQFSKSIKLFNSSLFEDSRQNVNNXLFXMXNKLKINKNHFSIKEIKIAYVKSXVNETMIKHIAFRMKNMITNSFLEAEEILLIINKMYNDFNQHHMTQ
Ga0272435_100044528	F033266	N/A	MFNHSSTEEHFEEFQNRFSQTSDADSSKSRMKSLSAASFLHEDDELFVEIIILFIFYEIXKTXSLALDEETDQLYKLNKQQEDEIKELKIKLQAKKNTSFNFIYFKRSRSQKIPDSLLFTDEKNSI
Ga0272435_100044529	F004755	N/A	MNFILSFNVFFFYLDYHKKQLITDLKDKIHSHLQFIXINQLVQSDSLKEIHFYLICLNNDQRVIREIKNKIKRVDDISKTIFHKVTIVFQSVDHLKSDHLKSRDAILTNIKEVDILVKSCFICHKSDHSSKKCLD
Ga0272435_100044532	F059496	N/A	LIFKNSYNXILKIQKKIDTKASIYVMFRDCAKLERNVFVTXKENDVNEQNVDKRKKC
Ga0272435_100044536	F070710	N/A	MIKQSFLQILQYNIRKSLKIQKLFLIIKEVHDFDIVIIQKQSYNINNTQSFNSAHNFFYLVKNTSSQSRTCIYMNKHLRFNQXMIKIAESNICLIRILTHNTDNKTQMLQLINIYNSCSLFFTFTEKFSIISRLSELLKDDCKQLIIRDFNLHHSHXEEXRCFT
Ga0272435_100044548	F028367	N/A	VKIISLCNLDKILLKENYFDKSFLINALLILQNESFNLRSLINSDSVVYMIIHINLVDRVCKKLRIQSISLIKEKLIKEYDEKIFKKIIIHKILLNLIIESYKKLTVSMLITDINHHEVILEKSXMNKNEILLNMQIDIIVFSNQLNTLISIFSISLNSKHSSXLQSTSSTFISQSKISRMLKQSVSTTIQK
Ga0272435_100044549	F055317	N/A	LFFVQFKSTFIFFTMTFKNTFNKDKAFIDFLQQTCSQAFSFIINLQHAFSFIAFNKSNTEIIILNDMKVXKKCIYALNKETNHLVEMKQRDKSEIQQLKAKLQAFTAITVNIIITALLIIIYFKQFKYHKIFNSLMFIDEKNSTXENXSLDIREKLAINVNIFSNELYKLSHINSXLTDDIIEITQVRRDLNCDNLYLTVNELLKKLAQSFHDSDKKDNYRREYINLIQESKKLNDFFNQFQXLYIYLKYQKNVLVIDLKNKINSRLXIFXTAQMKSLIKLSNIXNYLIHLNNEHKAVQEIKNKLLKHNDSKIIISKAIIAVQSLTLKSDXSKSRSAVLTNIKNADVLVEICFICHKSNHSFKECLNQSIKVNAVDENYDHFKLDTESEFESKN
Ga0272435_100044562	F003820	N/A	MKLFSYLEYDDCILMNDLQNKINNRLQNALSVCSENFTSLTCLRIFLQDVNNKQRVNYQLRSQLRTVIIKVTVVSDKRAATSLSAVTTLIINYVKSILSFISESARSSIICYTCKISSHLFKNCSQNKINTSASCAFTLCLHEIIISKNKKNEKMSSFKDSEAKN
Ga0272435_100044563	F000597	N/A	MKEMLISSTMSMSDDSFASESLTTECVLSSNKISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIKSLTLIKAKSIXEFDNHYAKKLITHVIYLNLTVQDHTIDTASMLITRLDQHQMILEKTXMNKINLVIDM
Ga0272435_100044565	F057010	N/A	MTMKALKKRCEELKARLQAREITSSSSIYSERSRFQKILDSFLFTDEKNSIXENXYEKVQNKLKINVDLFSSERVKLSYVYFKLFDDAAEITQSRRERDCFNSYKIVNELLKELAQLFNDSDKEVNFRRNYYNLIQEQKKFSEFYTQFQRLFFYLDYQEKQLIVDLKNKINLRLQFAXVTQLIQLSTLKEIRFYLIXLNNDQRAIQEIKNREAMIKAXTTKQIIFAEESVKATRRIIETKMTDQSKSRDAVLTNVKEND

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272435_1000445

Overview

Ecosystem & Geography

Associated Families

Sequences