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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031447 Open in IMG/M |
| Scaffold ID | Ga0272435_1000490 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 61067 |
| Total Scaffold Genes | 75 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (18.67%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (30.00%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.7 | Long. (o) | 159.2 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F002432 | Metagenome | 559 | Y |
| F028667 | Metagenome | 190 | Y |
| F032102 | Metagenome | 180 | Y |
| F036036 | Metagenome | 170 | Y |
| F039410 | Metagenome | 163 | Y |
| F052973 | Metagenome | 141 | Y |
| F069514 | Metagenome | 123 | Y |
| F070712 | Metagenome | 122 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272435_100049027 | F052973 | N/A | MFKDCVKLERNVFVTQKKDDVDEQDIDERKECXERKKVLSFI |
| Ga0272435_100049035 | F036036 | N/A | MFISLIHHLFSCFDQSFASEDQYLIHVIKYIFNLNDLQTFASAFILDDVRVEVHTRMKTLVHEEKNQENDXKQDVIVDKLDYE |
| Ga0272435_100049036 | F032102 | N/A | MKIADLKKNISESIYKQILEMNEIDENCTLLREAIARDEKQYKDIKLKNCXIQNEILYHDSQL |
| Ga0272435_100049039 | F000597 | N/A | MKDVLISSTMSMSDDSFASESLITECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIKSLTLIKAKSIQEFDDHYIKRLIIHVIYLNLTV |
| Ga0272435_100049048 | F070712 | GAG | MNDIKEKKFLIKVRKQVIFAEKXDSLNLYKKIEVITLVNHSKSHDVILTSVKDINLQAEIYFICYKSNHTSKECSDXSRINALKNDEFDQFTLNSEFDFDLKN |
| Ga0272435_100049058 | F000597 | N/A | MKDVLISSTMSMSDDFFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIICDQLQIKSLTLIKAKSIREFDDHYAKKLITHVIYSNLTVQDHMIDTASMLIIRLDQHQMIFEKT |
| Ga0272435_100049059 | F028667 | N/A | MTCDFESVKSRTAHLLRSTASRRVFIISFNASAESQNVATSXDINMNQQLHQXAIDQSDEIIKMLIELRDQRDMTLKLNEQXIVVQVEHDKRLNQLEIKQMIIDTLEEINKHYREKMLNLKNKLKEVLHSANQSXSRQSTESRVSTKSLSXASIENYTQRESSTLFDNDHHKFFKFLNSFIFTDEDELTXNSXRVKMNDKLQTNVDHFNNENIYIVYVISRLEDDAAEHIFAXRRHDASHSYISIDELFEHLKEIYDDQNKNRKCRCKYNALRQAEKSFNVFYFDFMKLFSYLEYDDCTLMNNLQNKINNRLQNALSICLKDFITLHHLKSFLQSMNNRQXVNYQLQSERCMIIIKVVIASEKRVTSLSAVTTLIIEYVKSTIFSTSESVRSSIVCYICKISNHLSKNCSQNKINTSASQAFTLHLHKIIISKNKENEKMSFENSEAKN |
| Ga0272435_100049060 | F002432 | N/A | MKFNNNFNIFLITSMIFFYFNKEFHLRMSFNSDTTDYKTTHERLEARKADDIVIXMKELLNFDHQQLKKTKLTIKVQINKHRXNVTYEVDDXVXLSFRNVKTTRLCKDLKNKQLNLYQITAKVSIFYHLHLSVSMKHLHSMFSLKLLQSYSEDSLSEQHSESLRSITIKDDEHXEINDILNFRRVMILVFIYSSFSLHLISF |
| Ga0272435_100049063 | F039410 | AGTAG | MKETFRAFKLHXVLYAIFLLMFFMNRMNTSVXFFFEXFNNVLNKAMFMLXIENDSFXIIVETDRLSILEIFDXEIKVNEVDCDQLKCFELREIEKIEMKVFNXFEKTMTSIHIFSNISFLFIHDFSNMTSXXLMSAINIETVNFLXLSMMRFNRILXVIVFLNIFSSYSCINFSFVSNINXILSSLHTLSTRLICMIV |
| Ga0272435_100049074 | F069514 | GAG | MIEFVDNNALFSVIFLISFFLNKDFHSRMSFESDVIEYESSCECLQITKAENISEHINKTLKFACESLVKTQEQIVENEICSYVTRT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |