NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1000495

Scaffold Ga0272435_1000495


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1000495 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)60822
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028368Metagenome191Y
F033265Metagenome177Y
F070710Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_100049516F033265N/ALNYLCQKTITSFAQSYIISSKNITMFSVIEKTMTSQLKKXFESCYETFINCMIYSVLLFQTKTLNSYQLCERVFANDXESQLVYSQFIILKSMINXNESIKTLNVNLEFTAITCRMTESNKYLXXNSMIISIFSXSLQXFFSTLIKNFTLEXVSIQIQLTMKQLVNDLKLKRQMILLFEXKSYXALIINNXKRRSXSLKFRSINIDKTSHMK
Ga0272435_100049549F028368N/AMLESIYQSQCNXXELQSFQTQYXIRVQVKKLVIFSTVIEVKIISLCNLDKILLKENYFDKSFLINALLILQNESFSLRSLIDSDSVIYMIIHINLDNKVCKELRIQSISLTKEKLIKEYDEKIFKKTITHKILLNLIIESHKKLTVSMXIADINNHEVILEKSXMNKNEILLNMQINVIVFLKQLDTFISIFFISLNSKHSSXLQSTLSTSIFQSKISRMLKXSVSTTIQKESFIIQSINIASFKTLLNRSKKNQTEVFALFIKISIEKSRTTLSAIXTLXTSLLSRKLLRIXKLLKSSCLQNITSF
Ga0272435_10004956F070710N/AMIKQSFLQILQYNIRKSLEIQKSFLINREVRDFNIIVIQKQSCNINNIQSFNSAHNFFYLVKNTSSQSRTCIYVNKHLRLDQXMIETVESNICLIRILTHNINDETQMLQLMNIYNSCSLFFTSIKRFLIISRLSELLKDDCKQLIMKDFNLHHFHXEK
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