Scaffold Ga0272435

Basic Information
Taxon OID	3300031447 Open in IMG/M
Scaffold ID	Ga0272435_1000567 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031447 Open in IMG/M

Scaffold ID

Ga0272435_1000567 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	55163
Total Scaffold Genes	65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (20.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

55163

Total Scaffold Genes

65 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (20.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.7	Long. (^o)	159.2	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.7

Long. (^o)

159.2

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F008115	Metagenome	338	Y
F008169	Metagenome	337	Y
F021452	Metagenome	218	Y
F028368	Metagenome	191	Y
F032884	Metagenome	178	Y
F055317	Metagenome	138	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100056720	F055317	N/A	MTFKNTSDKDKAFVDLLQQTRSQAFSFIIDSQHTSSFIAFNESNAEIIILNDIKAXKKCIYDLNKETNHLVEMKQRDKSEIQQLKAQLQAFTAVTVNVIITAFLIITYFKXFKYHKILDSLMFTDEKNSTXKNXFLDIREKLAMNIDIFSNELYKLSYINFXLADDVVKVIQVRCDFNCDNFYLTVNELLEKLAQLFHDSDKKDNYHREYINLIQESKKFNDFFNQFQRLYIYLKYQKNVLVIDLKNKINSHLXIFXTAQMKSLIKLSDIXNYLIRLNNEHKTVXEIKNKLFKRDDSKIIISKATIAVQSSTLKSDXSKSRSAVLTSVKNADVLVEICFVCHKSDHSFKECLNQSIKVNAVDENYDCFELNTESEFKSKN
Ga0272435_100056724	F021452	N/A	MSDNSFDFKLFTVDVILNSLEKIFRFFALINTEVTDMTFIDESLMSKLCECFDIQLISLSKSKLIQLYDETSDXKSITHALYTSIMIQEHKNEMMLLLITCLDQHKIIIENFXLKINQMLINSAND
Ga0272435_100056733	F002432	N/A	MQNDXAKXISMIKFSDNVNTFSIISMISFYFNKKFHSXMNFNLDTTDYEITHEXIEARKADDIVIXMKELLNFDHQQLKKTKLIIKAQINKHRXDIIYKIDDQIXLFFRNIKIIKSCKNLKDKQLNFYSIIVKVKTFYHLCLFTSMKHIHSMFSSKLLQSYSEDLLSEQHSESLRSIIIKDDEYXKIDDILNFKCYQDXIQYKVKXKDLDRNDEXYYVDKEKFNDSKKVLNEFHKLYSSKSR
Ga0272435_100056753	F032884	GAG	MTIRNERVEREECEETKKNERTMTRVEKERLYVQTIDVIDQREDIKQ
Ga0272435_100056757	F008115	N/A	MLXNIYXLHDLLSSIVSNRDFQFISTMXKSLCKXLRITASLFTVYHFEINNQLKXVNQDVERELRIYCNYMQNDXVKXIFMMKFSDNFNIFLIISMILFYFNKEFHSXMSFDSDTTDYKTTCEQLEARKADDIVIXMKELLSFDHQQLKKTKLIIEVQINKHKRDITYEVNDXVXLSFRNIKTTRLCKDLKDKQLNLYQITAKVNIFYHLHLSDSMKYLHSMFSSKLLQLYSEDSLSEQHSKSLKSITIEDDEHINDILNFRCYQGXIQYKVKXKDLDRNDEXYYVDKEKFDDSEKVLNEFHKLYLSKPR
Ga0272435_100056760	F028368	N/A	LLXFQFEFRFKKLVISSKVIEKIEIISLCKLDEILLKENYFEKLFLIDAHLISQSRSFSLHSLIDSDSVVYIIIHFNLVDKVCEKLKIQSISLTKEKLIKDYDEKIFKKTIITHKILLNLIIKSHKKLTVSMLIVDINYHEVILSKLXMNKNEILLNMXNDVIVFSNQLNTSISIFXILLNSKHLSXSQSTSLSSITQTKIFMMLKQLISITAQKELFSIQSINITSFKTLLNYSKKNKIKVFVLFMMNINRKITYNTQCNLSALNISSINETTQNLKDIKAKLLLKYHEFLNVFDXV
Ga0272435_100056761	F008169	N/A	MFYKIXKTRSLALDQETDXLYELNKQQEDEIKELKIRLQAKENTSSDFIYSERSRSQKIPDSSLFTDEKNFTXKNXYEKIQNKLEINIDLFSNEXVKLNYIHSRLFDDAAEITQARCERDCVNLYKIVDNLLKELTQLFNDSNKKVNFHKEYYNFIQEFKKFNEFYTQFQHLSFYLDYHEKQLIIDLKDKINFRLXFIXVNQLVQSDSLKEIHFYLIHLNNDQRVIQEIKNKLKRVDDFSKTIFYKVTVVTQSVNHLKFEQLKLHDAILTNVKEADILFKSCFICHKSNHNSKKCFDRSTKINAVNKEYDCFDFNSNFDSKN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272435_1000567

Overview

Ecosystem & Geography

Associated Families

Sequences