NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1000582

Scaffold Ga0272435_1000582


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1000582 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)54156
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (37.93%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055317Metagenome138Y
F098339Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_100058251F098339N/AMIEFINNNILSLIILLTFFFMNKSFHSCMSFNSDIVKYESIRERLQIAXVKDIFNHMNKTLIFACEALIKTXKQMMNQINKHRKKINYETESKLFLNE
Ga0272435_100058256F055317N/AMKQXDKSKIQQLKAKLQAFTAITVNVIITAFLIVIYFEXSRYHKILNSLMFTDEKNSTXKNXSLDIREKLAININIFSNKLYKLSYINSRLADDIIEITQVRCDLNYDNLYLTVNKLLKKLAQSFHDSDKKDNYYREYINLIQESKKFSDFFNQFQRLYIYLKYQKNVLVINLKNKINSRLXIFXTAQMKSLIKLSDIQNYLIRLNNEHKAVQKIKNKLLKCNDLKIIISKATIAVQSLTLKSDXSKSRSAVLTSIKNADVLVEICFICHKSDHSFKECSNQSIKVNAVDENYDRFKLNTESEFKSKNESFLQQSLKXRLYLCAI
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