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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031447 Open in IMG/M |
| Scaffold ID | Ga0272435_1000689 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 46890 |
| Total Scaffold Genes | 47 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (12.77%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (20.00%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.7 | Long. (o) | 159.2 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F001253 | Metagenome | 736 | Y |
| F006206 | Metagenome | 378 | Y |
| F013598 | Metagenome | 269 | Y |
| F017941 | Metagenome | 237 | Y |
| F018839 | Metagenome | 232 | Y |
| F036036 | Metagenome | 170 | Y |
| F044226 | Metagenome | 154 | Y |
| F094626 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272435_100068913 | F044226 | GAG | MMKFNNNFNIFSITSMIFFYFNKEFHFQMSFNSNMIDYKTIYKRLEAKKANNIVI |
| Ga0272435_100068914 | F094626 | N/A | MFLNERNIVTARSFKKLENKMLDSFINLDLINFSYKLKLSEFMHVHDVFHSDLLCSVVDDFLSDQKNEFSDSIVINDEDE |
| Ga0272435_100068915 | F036036 | N/A | MLINLIHHLFLYFDQSFMSEDQCLVHLFKYILDSIDLQAFANVFILNDVRIKAHMRIVRDRFKASHRNVI |
| Ga0272435_100068918 | F013598 | N/A | MNFIINLFDLYDYNAILTVICRLSKERHYISCIIDDEDITAEKTAEMLIQ |
| Ga0272435_100068919 | F017941 | N/A | MKIADLEKNNDQSIYKQILEINEIDENCTLLREAIARDEAQCKDIKLKNY |
| Ga0272435_100068922 | F000597 | N/A | MSMSDDSFASESLITECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDNHYAKKLITHVIYSNLTVQDHTIDTASMLITRLNQHQMILEKT |
| Ga0272435_100068923 | F017941 | N/A | MKIVDLKKNIDESIYKQILKTNEIDENCTLLREAIARDETQYEDIKLKNC |
| Ga0272435_100068927 | F018839 | N/A | MIAKVITFDHLTSDLYAAVFIIAMFIELKDEDLTELNDFTILLNEDDFSLSQVTTEEINLFNI |
| Ga0272435_100068929 | F001253 | N/A | MKDVLISLTTSSLNDFFALKSLTIEYVLFSNKISYSLKSLIDIEAADYSFIDELIAQNVCDYLQIESLSLIKLKSIRKFNDHYAKKLITHAIYLNLTVQDHMKHFISMLITQLSQHQMILEKT |
| Ga0272435_10006897 | F006206 | GAG | LCKLDEILLKENYFEKSFLIDVHFISQKQSFNLCSLINNDSVVYMIIHFNLVNKVYEKLRIQSISLTKEKLIKDYDEKIFKKIITHKILFNLIIESHKKLTISMLITDIDHHKVI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |