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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031447 Open in IMG/M |
| Scaffold ID | Ga0272435_1000704 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 46356 |
| Total Scaffold Genes | 57 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (24.56%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.7 | Long. (o) | 159.2 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001253 | Metagenome | 736 | Y |
| F028978 | Metagenome | 189 | Y |
| F041516 | Metagenome | 159 | Y |
| F064254 | Metagenome | 128 | Y |
| F070710 | Metagenome | 122 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272435_100070414 | F064254 | N/A | MQELYKFVSSLFLLSFIXLFDDITAXNXFSMLIKSIIXMIVITALTIFKSFLKFMMFSFYCIAFHSTFHLRHVNKTCLINIXSLSHLHIIIAILNIYLSCRNXLKLIFLMRSCVNNALXDFAXFLCRCRCXXVISDVRYXKXAALNFSLQTTLHVYLICFCMSVSCVIISMH |
| Ga0272435_100070418 | F041516 | N/A | MIQRAIHIYEAYNSSLKDYEIIYEKENLSDIEKTLHMSKESILVKDFNLHHFT |
| Ga0272435_100070428 | F070710 | N/A | MINQKTRQILDDXEHSKSFLFAKLTTVTNNFMIKQSFLQILQYNIRKSLKIQKSFLINREVHDFDIVVIQKQSCNINDIQSFNSAHNFFYLVKKTSSQSRTCIYVNKCLRLNQXMIETIESDICLIRILTHNIDNEMQTLQLINIYNSCSLFSTSIKRFSIISRLSKLLKDDCKQLIMKDFNLHHSYXERXKCFT |
| Ga0272435_100070445 | F070710 | N/A | MIKQSFLQILQYNIRKSLKIQKSFLINKEVHDFDIVIIQKQSCNINDIQSFNSTHNFFYLVKNTSSQSRTCIYVNKHLRLNQXMIETIESDICLIRILIHNTDDKTQMLQLINVYNLCSLFFTFIEKSSIISRLSELLKDDCEQLIMKDFNLHHSHXEK |
| Ga0272435_100070454 | F001253 | N/A | MKDVLISSTTSSLNDHFASKSLTIECVLSSNEISYSLKSLIDTEAADYSFIDELIMQNVCDHLQIKSLSLIKFKSIRKFDDHYAKKLIIHAIYSNLTVQDYMKRFVFMLITRLN |
| Ga0272435_100070456 | F028978 | N/A | MKIADLKEKENDESIYXLILEANRINENYILLHEVVLKDEAQYEDIKLRNCRVQNEILYQSDLLXIFFNEHLQMKLI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |