NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272435_1000719

Scaffold Ga0272435_1000719


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1000719 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45821
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (13.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002432Metagenome559Y
F039410Metagenome163Y
F044226Metagenome154Y
F061400Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_10007193F002432N/AMQNDXAKXLFMMKFSENFNIFLIISITSFYFNKNFHSQMSFNSNTINYKIIHEHLEVRKANDIAIXMKEFLIFDCQQLKKTKQIIEAQINKHKQDIIYEINDXVXLFFRNIKTIKSCKDLKDKQLEFYQIIVKVEIFYHFHLSISMKQLHSMFSLKLLHFYS
Ga0272435_100071943F061400N/AMNLNSEKTIIKAXDIYRREEDENNMIDESDDSFKTNLQNVVHSINV
Ga0272435_100071955F044226N/AMKFSDNFNIFLIISMTFFYFNKEFHSXMSFNSNMIDYEITHEQLEVKKANDIVIQMKELLNFDC
Ga0272435_100071960F039410AGTAGMKEMFKAFKLHXVLYVISLLIFFMNRVNTSVXFFFERFNNVLNETIFMLXIKNDSFXIVVEINHLSILEIFNXKIKVNEVDCNQFECFELKEIEEIEMKVFNXFEKTMMLICIFSNILFLFIHDFSNMTSXXLMSAINIETVNFLXLSMMRFNRILXMIVFLNIFSSYSFINFSFINDINXIFSSLHTLLTRLICIII
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.