NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1000729

Scaffold Ga0272435_1000729


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1000729 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44782
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (10.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F001253Metagenome736Y
F002432Metagenome559Y
F003820Metagenome466Y
F036504Metagenome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_100072916F001253N/AMKDVLISSTTSSSNDLFASKSLTTECVLFNDEISYSLKSLIDTEAADYSFIDELITQNVCDHLQIESLSLIKLKSIRKFDDHYAKKLITHAIYLNLTV
Ga0272435_100072922F002432N/AMKFSDNFNIFSITSMIFFYFNKEFHSRMSFNSDMIDYETTCERLEARKADDIVIQMKELLNFNHQQLKKTKLTIKVQINKHKXNVTYEVDDXVXLSFRNVKTTRLCKDLKDKQLNLYQITAKVNIFYHLHLSVSMKHLHSMFSLKLLXSYSEDSLSEQHSESLRLITIEDDEHXKIDNILNFRCYRDXIQYKVKXKDLDRDDEXYYVNKEKFNDSEKVLNEFHKLYSSKSR
Ga0272435_100072933F003820N/AMKLFSYLEYNDCILMSDLQNKINNRLQNALSICSKNFTSLIHLRIFLQSVNNKQRVNYQLRSQLRTVIIKVMIVSDKCTATSLSVTTSIIDYVKSIIFFIFKSARSSIICYTCKTSSHLFKNCSQNKIDTSAS
Ga0272435_100072934F000597N/AMSNNSFASESLTIECILSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIQEFDNHYAKRLITHVIYSNLTV
Ga0272435_100072940F000597GAGVTFIKDVMKNVLISSTMSRSDDFFASKSLTIECVLSSNEISYSLKSLIDIKAADYSFIDEVIAQIVCDQLQIKLLTLIKAKLIQEFNDHYVKKLITHVIYLNLTV
Ga0272435_100072941F036504N/AVIFRLEDDADQQIYAKHHVDAFSFYQSLSKLLKHLKEIYEDQNLIQKCHYEYITLKQLNKLFSSFYSEFTRIFSFLNYNDIILMNDIQNKINNHLQNMLFICLIEFSSLNKLKIFLQDVNNKQXVNYQLRDEQQTVKSIAASKKRFISSSTSASVLITNYVQFVTFFTLESEXSRMSIICFNCKASSHLSKNYSQLKTSTSTSHAFISCLNEIIMLKEEKKLFTEKLKNETKN
Ga0272435_10007296F001253N/ALSQXDHHVERREEIIYREIEEXDKKLVTFIKDMMKDVLISSTMSSSNDLFVSKSLTTECVLSSNKISYSLESLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIRKFNDHYAKKLITHAIYSNLTV

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