NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1000796

Scaffold Ga0272435_1000796


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1000796 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42004
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (18.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F003820Metagenome466Y
F028978Metagenome189Y
F087978Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_100079621F087978N/AMFSLKLLQLYSEDFLSEQHSESLRSITIEDDEHXKIDDILNFRHYQDXMQYKVKXKDLDRDDEXYYVDKEKFDDSENVLNEFHKLYSSKSR
Ga0272435_100079629F003820N/AMKLFNYLDYDDCTLMNDLQNKINNCLQNALSVCSENFTSLTYLRIFLQDVNNKQXVNYQLRSQLCTVIVKVSVVSDKCAATSLSMTTLIIEYIKSTIFSTSESVRSSIVCYICKISDHLFKNCSQNKINTSASCVFISRLHEIIISKNKKNEKMSSFEDSKTKN
Ga0272435_100079630F000597N/AMKDVLISSTMSMSDDSFASKFLIIECVLSSNEISYSLKSLINIEAADYSFIDEVIAQIVCDQLQIELLALIKAKSIREFDDHYVKKLITHVIYSNLTV
Ga0272435_100079648F028978N/AMKIADLEEKENDESIYQLILEVNRINENCILLRKVVLKDEAQYEDIKLRNYQVQNEILYQDDLL
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