NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272435_1000812

Scaffold Ga0272435_1000812


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1000812 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41668
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (25.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018839Metagenome232Y
F039410Metagenome163Y
F046102Metagenome151Y
F081945Metagenome113Y
F094626Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_100081214F039410N/AMFIMNKAKTLILFFFEXFNNVLNEVMFMLXIENDSFXAVIEMSRLSIIKVLVXVIEKNEVDRNQLKCFELSEIEKIEIEVFNXFKKTMTSFCIFSNISFLFIQSLLNMTSXXLISAINIDTVNFLXLLMMRLSRILXVIVFLNIFSS
Ga0272435_100081216F081945N/AMFSHSFTEKHSEEFQNHFSQIFDADLSKSSSAALFIHENDESFIETIIFFMFYKI
Ga0272435_10008124F094626N/AMFLNERNIITARFFKKLNDKMLDFFINLNLVNSSYKLKSSEFMYVHDVFYSDLLRSVVDDLLSDQKNELSDSIVINDEDEXEINDILNFRRY
Ga0272435_10008128F018839N/AMIAKVVTFDRLTSDLYAAVFIIAMFIESKDEAKLIKLDDFMILLNEDDFSLSXVMTKEINLFSI
Ga0272435_10008129F046102N/AVTFIKDMMKDVLISSTMNSLNDFFALKSLTTECVLFSNKISYSLKSLIDIEAADYSFIDELITQNVCDHLQIESLSLIKFKSIRKFNDHYAKKFITHAIYLNLTVQDHMKCFIFMLITQLNQYQMILEKTXMNKIKMTIDMKDDCLQFSSFEAHIKVSIKAHSTVLSNKKIMIEQKSLIS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.