NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1000820

Scaffold Ga0272435_1000820


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1000820 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41416
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (61.22%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001253Metagenome736Y
F025887Metagenome199Y
F079402Metagenome115Y
F098340Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_10008203F001253GAGVTFIKDVMKDVLISSTMSSSNDFFASKSLTTECVLSSNEISYSLKSLIDIEAADYSFIDELIAQNVCDHLQIESLSLIKLKLIRKFDDHYAKKLITHAIYSNLTVQDHMKRFTSMLIT
Ga0272435_10008206F098340N/AMIKVAVYQTLIKKNDVKIFTLIISEINKMLSSIKDSAKLNEMIFVMSLKKLKKKLLIVYHDFLNVFDKEKITQLLLH
Ga0272435_10008207F025887GAGMLIFCFINMLDDSFNFKSFIINIILNSLKKIFQFFILINIEVTDMMFIDDSLISELCECFDIQSISLFKSKLIHSYDEILD
Ga0272435_10008208F079402N/AMQNKLKMNKNHFSIEEMKIAYVKSRVSETMIKHIAFQMRNMITNSFLEAEEILSIINKMYDDFNQCHTTQRQFLKLY
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Institute for Fundamental Biomedical Research
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