NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1000840

Scaffold Ga0272435_1000840


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1000840 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40949
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (12.82%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F005901Metagenome386Y
F026450Metagenome197Y
F046102Metagenome151Y
F068292Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_100084016F026450N/AMFRFFKERFKVSFFIVEDNDSFAEIITSSMTMKALKKRCEELKARLQAREIISSSSIYSERSRFQKILDFSLFTYEKNFIXKNXYEKVQNKLEINVNLFSSERVKLSYVHFRLFDDAAEITQSRREHDCFNLYKIVDELLKELAQLFDDSDKEVNFRRNYYNLIQEQKKFSEFYT
Ga0272435_100084033F068292N/AMSRQDTQSAEQRVNQKEVHSQRESSTLSDNENENNHHKFIKLSNSLIFIETNDSIXKTXNIKIADKLDINVNYYSTEKICIVYVIFRLEDDADQQIYAKHHIDAFSFYQSLSELLKHLKEIYEDRNLIXKCRCKYVALKQLNKSFSSFYLKFTKIFSFLNYNNITLMNNIQNKINNHLQNALSVCLIEFSLLDKFKIFLQDVNNKQXVNYQLRVTILAFVYSSTSLRLISF
Ga0272435_100084035F005901N/ALTXNSXRIKIDDKLQANVDHFDNENICIVYVISRLEDDAAEHIFAQHQHDASHSYISIDELFEHLKEIYDELNRNRKCRREYNALRQAEKSFNVFYFDFMKLFSYLEYDDCTLMNDLQDKINNCLQNALSVCSENFTSLTRLRIFLQDVNNKQRANYQLHSQLRTVIVKVTVIPDKCAATSLSVTTLIINYVKSIIFSISESARSSIICYTCKTLNHLSKNCSQNKINTSASHAFISHLHEIIISKNKENEKMSSFKDSKTKN
Ga0272435_100084036F000597N/AMKDVLISSTTSMSDDSFASESLIIKCILSSNEISYSLKSLIDIKAADYSFIDEVIAQIVCDQLQIEFLTLIKAKSIREFDDHYAKKLITHAIYLNLTVQDHTIDTASILITRLDQHQMILEKT
Ga0272435_100084039F046102GAGVTFIKDAIKDVLISSTMSSLNNFFVLKSLTTECVLSSNKISYSLKSLIDTEAADYSFIDELIAQNVCDYLQIESLSLIKLKSIRKFDDHYAKKLITHAIYSNLTVQDYMKHFIFILIIQLSQHQMILEKTXMNKIEITIDMRNNHLQFS
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