NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272435_1000856

Scaffold Ga0272435_1000856


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1000856 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40397
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (36.59%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001253Metagenome736Y
F005901Metagenome386Y
F017767Metagenome238Y
F018839Metagenome232Y
F025887Metagenome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_10008561F018839N/AMMIAKVVTFNHLTSDLYAAVSIIAMFIESKSEAKLIELDDFTILLNEDDFSLS
Ga0272435_10008562F001253GAGVTFIKDVMKDVLIFSTMSSSDNLFASKSLTTECVLFSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIKSLSLIKLKSIRKFDDHYAKKLITHAIYLNLTVQDHMIDTASMLITRLDQHQMILEKI
Ga0272435_100085629F025887N/AMSDDSFDFKSFTVDVILNSLEKIFRFLALIDTEVTDMIFINESLMSELCKRFDIQSISLSKSKLIRLYDEISDRKLITHALYTSIMI
Ga0272435_100085640F005901N/AVISRLEDDAAEHIFARRRHDALHSYISINELFKHLKEIYDELNRNRKCRREYNALRQTDKSFNVFYFDFIKLFSYLDYDDCTLMNDLQNKINNRLQNALSVCSENFTSLTRLRIFLQDVNNKQRVNYQLRSQLRIVIVKVTVISDKCAATSLSAMMTSIIEYVKLTIFSIFESVRSFIVCYICKISDHLFKNCSQNKIDISTFCAFIFRLHEIVISKNKENEKMSSFSKNSETKN
Ga0272435_100085641F017767N/AMKDVLISSTMSMSDDSFASESLTIECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.