NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1000894

Scaffold Ga0272435_1000894


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1000894 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39134
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (8.11%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F003820Metagenome466Y
F028667Metagenome190Y
F061402Metagenome131Y
F068292Metagenome124Y
F074202Metagenome119Y
F091080Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_10008941F074202N/AMILXNFKMCVYEXSLFTCXKEIYMYVEKCFQLFYCXLRSQSLSLTKLLEKCASNFIKTVNCKMNCKTIYMSFLLMSSCFLCSDNAFNLALLLNDDFFLKLVISKLRLHVETKLDFKEEIILRCSFFTAKDDNLDSSFNLKTAINFIKFLXFIIFYNNXSFFFNLFLSVKCDVTQSKXANTENXTFKSKIVINLAVVDLAIINFAVVNLAVLNNVDNKSSLKFENLDCKN
Ga0272435_100089415F091080N/AMINVYKAYVINFXSNISSYNXINFDFDSNINXISKHSHSFDIKDSLMKVMLMTSVSIRARNLNIFFKLLKMTLTMNDLKLNESSNMLMKQNMNISLSVTTLMKTDCFSNSQXSHALESSXNNHMLYILTSVMNMSESIRVQI
Ga0272435_100089421F028667N/AMTSLXLALDRSLTVDKCSSTTLLSTCRQYEIIYFVYSENSQEILRITFIKTHLQIYSNLSNQSLNLTTIKSILIFLTMTRDSESVESQTAHLLRSTASRRVFLISFDVSAKSQNVAISXDINTSQQLRQXTIDQSDEIIKMLIELRDQRDMTLKLNKQXINVQVNHIKRLDELENNQMTIDTQEETIVDLREKVLSLKKRQRSANQSRSRQSTKSLSRQSIENHTRRESFTLFNNDHHKFFKFSNSSIFTDEDESTXNSXRIKIDDKLQTNVNHFDNENICIVYVISRLEDDAAEHIFARCRHDASHSYILIDELFEHLKEIYNELNRNXKCRREYNALKQTDKSFNVFYFDFMKLFSYLDYDDCTLMNDLQNKINNRLQNALSVYSENFTSLICLRIFLQDVNNKQRVNYQLRSQLCTVIVKVTVVPDKCAATSLSAVMTSIIKYVKSTIFSISESVRSSIVCYICKTSDHLFKNCSQNKIDISTSHAFTLRLHEIVISKNKKNEKMSSFSKNSEAKN
Ga0272435_100089426F003820N/AMNDLQNKINNHLQNALSVCSENFTSLTRLRIFLQNVNNKQRVNYQLCNECCTVIIIVIIKVMIVSDKCIATSLSAVTTSIIEYVKSIIFSISESVRSSIICYICKISDHLFKNCFQNKINILTFQAFISRLHEIIISKNKENEKMSFENSETKN
Ga0272435_100089427F000597N/AMKDVLISSMMSMSDDSFAFESLIIEYVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIKSLTLIKVKSIREFDNHYAKKLITHVIYFNLTV
Ga0272435_100089433F061402N/AMIEFIDNNAILLLIEQLMFFLNKSFHFHINFDLNSIEYEITQARIEADKAKNIFKHMK
Ga0272435_100089437F074202N/AMKTVDCKMNCKTIYMSFLLMSSYLFCSDNAFNLTLFLDDDLFLKLVISKLRLHVETKLDFKEEVILRCSFFTAKDDDLNSSFNLKTAMNFIKFLXFIIFYNNXSFFFNLFLSVKCDVTQSKXANIENXTFKSEIVINLAVVDLAIINFAVVNLAVLNNVDNKSSLKFENLDCKN
Ga0272435_10008948F068292N/AMSHQETQSVKHXVNQKEISSISEVNQRLXSSQESFTLFNNENDHHKFIKLSNSFIFIETDDFIXKTXNIKIADKLDVNANHYSTEKIRIVYVIFRLEDDADQQIYAKHRVDAFSLYQSLSELLKHLKEIYEDQNLIXKCHCKYVTLKQLNKLFSFFYSEFTKIFSFLNYDDITLMNDIQNKINNRF
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