NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1000903

Scaffold Ga0272435_1000903


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1000903 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38748
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (17.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F008115Metagenome338Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_100090315F000597N/AMSMSDDSFASESLITECVLSSNEISYSLKSLINIEAADYSFINEVIAQIFCDQLQIESLTLIKAKSIREFDNHYAKKHIIHVIYLNLTVQDHTIDTASRLITQLD
Ga0272435_10009038F008115N/AMLXNVYQLHDLLSSIVLNRDFQFISTMXKSLCKRLRITASLFTVYHSEINDQSKQVNQNVERKLRIYCNYMQNDXVKXIFMMKFSNNFNIFSITSMILFYFNKEFHSQMSFNSDTTDYKTTCERLEAKKANDIIIXMKELLSFDHQQLKKTKLIIEVQINKHRQNVTYEVENXVXLSFRNIKTTRLCKDLKNKQLNLYQITVKINIFYHLHLSVSMKHLHSIFSSKLLRSYSEDFLSEQHSESLRLITIKDDKHXEINDILNFRCYQDQIQYKVK
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