 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031447 Open in IMG/M |
| Scaffold ID | Ga0272435_1001003 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 35427 |
| Total Scaffold Genes | 35 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (17.14%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.7 | Long. (o) | 159.2 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001253 | Metagenome | 736 | Y |
| F005901 | Metagenome | 386 | Y |
| F028367 | Metagenome | 191 | Y |
| F028368 | Metagenome | 191 | Y |
| F057011 | Metagenome | 136 | Y |
| F074203 | Metagenome | 119 | Y |
| F080688 | Metagenome | 114 | Y |
| F087978 | Metagenome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272435_100100312 | F001253 | N/A | MKDVLISSTISSLNDLFVLKSLTIEYVLFSNEISYSLKLLINTEAADYSFIDELIAQNVYDHLQIESLSLIKLKSIRKFDNHYAKKLITHAIYLNLTV |
| Ga0272435_100100315 | F005901 | N/A | VISRLEDDAAEHIFARRRHDASHSYISIDELFEHLKEIYNELNRNRKCRREYNALRQTDKSFNVFYFNFMKLFSYLDYDDRTLMNDLQNKINNRLQNALSVCSENFTSLTRLRIFLQDMNNKQRVNYQLRSQLRTVIVKVTVVPDKCAATSLSAVMTSIIKYVKSTIFSISESVRSSIVCYICKISDHLFKNCSQNKIDISTSHAFTSRLHEIVISKNKENEKMSSFSKNSEAKN |
| Ga0272435_100100319 | F057011 | N/A | LKENYFEKSFLINASLISQSNSFNLHSLINSDFIIYMLIHDKLVNKVCQKLEIQFILLAKKKLIQDYDEKLVRKTITHKILFNLMIESHKKLTMSMLIADIEHHEAILSKLXMNKNEMLLNMRHDTIIFLNQLNISISIFLISSNTKHLSXSRSTLISSAAHSKTFKMLKHSVSFFQKESFLIQNINIIFFQALVKRKKKN |
| Ga0272435_100100327 | F028367 | N/A | VKIIFLCNLNEILSKENYFDKSFLVNALLILQNELFSLRSLIDSDSVIYTIIHINLVDKVCKELKIQSISLTKEKLIKEYDEKIFKKTITHKILLNLIIESHKKLIVSMLIADINHYEVILEKSXMNKNEILLNMQINIIVFLNQLNTLISIFSISFNSKHLSXLXSTLFTFISQSKISRMLK |
| Ga0272435_100100329 | F080688 | N/A | MHXTTHLNVHXSSDFENLHEKQTVKSTTSQLSEHFIKVQLSDHL |
| Ga0272435_100100331 | F087978 | N/A | MFSLKLLXSYLKDSLSEQHSESLKSIIIKDDEHXKINNILKFRCYQDXIQYKVKXKDLNRNDEXYYIDKEKFNDSEKVLNEFHKLYSSKSR |
| Ga0272435_10010037 | F028368 | N/A | LYKLDEILLKKNYFEKSFLIDTHLIFQKXSFSLHFLIDSDSVIYMIIHFNLVDKVCKKLKIQFISLIKEKLIRDYDEKIFKKTITHKILLNLIIENHKKLTISMLIADINFHEVILSKLXMNKNEILLNMQSNIIVFLNQLNASISIFLISLNSKHLSXSRSTSLSSITQTKTFMMLKRLVSITAQKKSFSIQSINVASFKTLLNHLKKNKIEVFALFMMNINKEIAYNTQCNLNALNVSLINETTQNLKDIKAKLSLK |
| Ga0272435_10010038 | F074203 | N/A | MFSHSFIKEHSEEFRNRFFHIFDADSSKSRTKSSSAASFIHEDDKLFIETIIFLVFYEIXKTXSLALDKETDQLYKLNKQQENEIKELKTRLQAKENTSSDFIYFKRSRSQKIPDSSLFTDEKNFTXKNXYEKIQNKLEINVNLFFNKRVKLSYVHSKLFNDAAKITQAKHEHDCVNFYKIVKDLLKELAQLFNDSNKKVNFRRKYYNLIQESKKFSEFYTQFQQLSFYLNYHEKQLIIDLKDKIHLCF |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |