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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031447 Open in IMG/M |
| Scaffold ID | Ga0272435_1001009 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 35236 |
| Total Scaffold Genes | 29 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (20.69%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (25.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.7 | Long. (o) | 159.2 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001253 | Metagenome | 736 | Y |
| F002432 | Metagenome | 559 | Y |
| F004755 | Metagenome | 424 | Y |
| F026450 | Metagenome | 197 | Y |
| F028368 | Metagenome | 191 | Y |
| F033266 | Metagenome | 177 | Y |
| F036504 | Metagenome | 169 | Y |
| F080688 | Metagenome | 114 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272435_10010091 | F001253 | N/A | VKDVLISSTMSSLNDLFASKSLTTECILSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIRKFDDHYAKKLITHAIYSNLTVQDHMKHFIFILIIQLSQHQMILEKTXMNKIEITIDMRNNHLQFS |
| Ga0272435_100100914 | F080688 | N/A | MHXTTHSDVHXSSDFEDFYEKQTVELMTSQLSEHFIKVQLSDHL |
| Ga0272435_100100916 | F033266 | N/A | MFSHSSIEEHSEEFQNRFFQTSDVDSLKSLSAASFIREDDESFTETIILLMFYKIXKAXSLAFDKETDQLYKLNKQQEDEIKELKTRL |
| Ga0272435_100100917 | F004755 | GAG | LSCIHSRLFNDTAEIIQTRREHDCINLYRIVEDFLKELAQLFNDSNKKVNFRKEYYNLIQESKKFSEFYTQFQQLSFYLDYHEKQLIVDLKDKIHSHLXFIXVDQLVQSDFLKEIHFYLIHLNNDQRVIQEIKNKLKYVNNVSKTIFHKVTVITQSVNHSMSDQSKSRNAILTNVKKADILVEICFIYHKSDHSFRECLNQPTRINAVNKEYDCFDFNFDFDFDFNSKN |
| Ga0272435_100100918 | F028368 | N/A | LKENYFEKLFLIDVHFISQKQSFSLHSLIDSDSVIYMIIHFNLVNKVCKKLKIQPILLTKEKLIRDYDEKIFKKAITHKILLNLIIKSHKKFTVSMLIVDINHHEVILSKLXMNKNEILLNMQNNVIVFSNQLNTSISIFPILLNSKHLSXSXSTSFFSIIQTKISMMLKRLVSITALKKSFSIQNINVASFKTLLNHLKKNKIKVFALFMMNINKEITYNTQCNLNALNCXDHA |
| Ga0272435_10010092 | F036504 | N/A | VNHYSTEKICIVYVIFRLEDNADQQIYAKHHVDAFLFYQLLSKLLKHLKEIYEDQNLIXKCCHKYVTLKQLNKSFSSFYSEFTRIFSFLNYDDIILMNNIQNKINNHLQNALSVCLIKFSSLDKLKIFLQDVNNKQQVNYQLHDEQXTVKLIAASKKRFVSLLTSTSALITSYVQLTTFFTLESEXSRMLIICFNCKVSSHLSKNCSQLKTSTSTSHAFISCLNEIIMLKEEKKLFTEKSKNETKNEXLSSKT |
| Ga0272435_100100922 | F026450 | N/A | MFHLFKEHFEASFFIVEDNDSFAEIITSSMTMKALKKRCEELKARLQARKIILSSSIYSERSRFQKILDFSLFTYEKNFIXKNXYEKVQNKLEINVNLFSSERVKLSYVHFRLFDDAAEITQSRREHDCFNLYKIVDELLKELAQLFDDSDKEVNFRRNYYNLIQEQKKFSEFYT |
| Ga0272435_100100925 | F002432 | GAG | MMKFSDNFNIFLITSMILFYFNKEFHSXMSFDSDRTDYETTYERFEARKAADIIIXMKELLSFDHQQLKKTKLIIEVQINKHKRNITYEVNNXVXLSFKNVKIMRLCKDLKNKQLDFYQITAKVSIFYHLHLSVSMKHLHSMFSSKLLXLYSEDLLSEQHSKSLKLITIKDDKH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |