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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031447 Open in IMG/M |
| Scaffold ID | Ga0272435_1001051 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 34092 |
| Total Scaffold Genes | 42 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (11.90%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.7 | Long. (o) | 159.2 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F040408 | Metagenome | 161 | Y |
| F051591 | Metagenome | 143 | Y |
| F057012 | Metagenome | 136 | Y |
| F078020 | Metagenome | 116 | Y |
| F086376 | Metagenome | 110 | Y |
| F104135 | Metagenome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272435_100105124 | F040408 | N/A | MYDYKSIFDIHIKNDAMKEEVSAAKKRVEMLQDVQNTLMK |
| Ga0272435_100105126 | F104135 | N/A | MNXDINMTQQYANALQCSDQMIRMFAAHLSILKHQLSLYSDEHKXAHLFIKLKFELRVIITNVQLISITXDALINLVAQLKTNLRKEHVLSLKXLRDEVLHDRDKINKKTHSKXKKFHXLTRFNSSSKTSLHTSSCYSKNLFNITCYTCNXKNHYFTDCRDKKIKNKXKEFDVNXVFIDLMLHISCFKISKKDKFLMNASNHXGKNKKFSL |
| Ga0272435_100105128 | F086376 | N/A | MTRSTESKSVSITHYDFQNVRKESLLSQNXIASEEEDMNVSSNIKEENMNALLFNHEMIKISISTELNAXISIHEADDIIIFIKYICQQHDIEIKIHNDMIQMLEDVNKINITLKAAQTRLQKEMKDKNMIIHNLKTASSQQSTLIFENHFLKSIKLLNSLLFEDSLQNVNN |
| Ga0272435_100105130 | F057012 | N/A | LFQDNLSAXDCCKFKKRSVLVKVVTESNILIFCFISMFNDSFDFKSFIVDVILSSLEKIFRFLALINTEVIDMTFINKSLMSKLCEYFDIQSILLSKSKLIQLYDEISDQKLITHALYTLIMIQEHKNEMMFLLITCLNQHKIIIENFXLKRNQILINSANDXLISSLKIQTLKFVVLKASSQSAFYRSESNEICKMKRKNLNLIVTSMIILKRLLNQKSVNKFIESALIAKQSTQVDLNQLRFFQSTEKKKFVNIIMIKVAVY |
| Ga0272435_100105132 | F078020 | N/A | MRFFFDHLISAXKDAVLTLNIEKFFFKAVKVSCXSTLRVELIEEFADYDYFECKALTDIEKTEMKAFNXFEKMMTLFRISSSISFLFIQSFSNMTSXXFISVINIETVNFLXLSTVRLSRILXIMIFFVSFPSYSLINFSLTSRMSXISSFXHI |
| Ga0272435_100105138 | F040408 | N/A | MYDYEFIFNIYIENNAMKEEVSAAKERIEMLQDVQNTLIK |
| Ga0272435_10010515 | F051591 | N/A | MLDAIALYFRYQSSRVISLRIVMTDLDLLFCTSREDKTDSDLIRNTVLLXNNVVLCAIFKRKRIRFRFLHQYTVFCAVLKSIDDLFFSCEFALQFINQITVXIDDSFFCVDELSFRRRFXPAXARKISIFDFXLATQSSVKLLSRMRACFDRTIVLYNLSIDLIYHMLX |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |