 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031447 Open in IMG/M |
| Scaffold ID | Ga0272435_1001060 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 33841 |
| Total Scaffold Genes | 32 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (12.50%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.7 | Long. (o) | 159.2 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F003820 | Metagenome | 466 | Y |
| F008169 | Metagenome | 337 | Y |
| F011463 | Metagenome | 290 | Y |
| F028367 | Metagenome | 191 | Y |
| F064254 | Metagenome | 128 | Y |
| F070712 | Metagenome | 122 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272435_100106011 | F011463 | N/A | MKLIIKVQINKHKXNVTYEVNDXVXLSFRNVKTTRLCKDLKDKQLNSYQITAKMSIFYHLHLSVSMKHLHSMFSSKLLRLYSEDSLSEQHSESLRLITIKDNKYXKINDILNFRCYRDRIQYKVKXKDLDRNDEXYYVDKEKFNDSEKVLNEFHKLYSSKSR |
| Ga0272435_100106014 | F028367 | N/A | LLRFQFEFRFKKLVISLKVIKEIEIISLCKLDEILSKENYFEKLFLIDAHLIFQKXSFSLHLLIDSDSVIYMIIHFNLVNKVYEKLKIQFISLTKEKLIRDYDEKIFKKTITHKILFNLIIESHKKLTVSMLIADIDHHEVILNKLXMNKNEILLNMQNNVIVFLNQLNTSISIFSILLNFKHSS |
| Ga0272435_100106015 | F008169 | N/A | VFYEIXKARSLVLDKETDQLYKLDKQQEDEIKKLKTRLQNKENTSSDFIYSEHSRSQKISDSSLFTDEKNSTXKNXYEKIQNKLKINIDLFSNEXVKLSYVHSRLFDDAAEITQTKCKCDCVNFYRIIEDLLKELAQLFNDSNKKVNFHRKYYNLIQESKKFNEFYTQFQRLSFYLDYHEKQLIIDLKDKIHSRLXFIXINQLVQSDFLKEIRFYLIHLNNDQRVIXKIKNKIKRVNDISKTIFHKATVVTQQSFDYSKSDHLKSRDAILTNVKEADILVESCFICHKSDHSFKKYFNRSTRINAVNKEYDCFDFNLNFDSKN |
| Ga0272435_100106016 | F000597 | AGG | VTFIKDAVKDVLISSTMSSSDNFFASKSLTIECVLSNNEISYSLKSLIDIEAADYSFIDELIVQNVCDQLQIKSLTLIKAKSIQEFDDHYAKKLITHVIYSNLTVQDHMIDTASMLITXLNQH |
| Ga0272435_100106026 | F003820 | N/A | LQNALLICSKDFITLHCLKNFLQSMNNRQXVNYQLQSERCMIIIKVIIASEKRVTFLSAVTTLIIEYIKSTIFSTSESVRSFIVCYICKILDHLFKNCFQNKINTSAFYLFIFHLHEIIISKNKKNEKMSFENNEAKN |
| Ga0272435_100106030 | F070712 | GAG | MNDIKEKKFLVKVRKQVIFAEKQDSLNLYKKIEVITFVDHSKLHDVILTNVKDIDLQAEICFICHKLSHTSKECSDQSRVNALKDDKFN |
| Ga0272435_10010604 | F064254 | N/A | MQEFYKFISLLFSLSFIXLFNDVTAXNXFNMLIESIIXMIIVAALMIFKSFLKFVMFFSHCIAFHSTFHLKHVNKMCLIDIXFLLHLHVVIATSSTHLSYKNXLKSIFLVHSCINNALXDFAXLLCSCRCRCVIFDIKYXKXAALNFSFQTILHVCLICFCMSVNLIIISVHXCLISDRNNSYASLIILSAASFSSTSACFVT |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |