NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1001061

Scaffold Ga0272435_1001061


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1001061 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33806
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (21.88%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001253Metagenome736Y
F076668Metagenome117Y
F086375Metagenome110Y
F100079Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_100106113F100079N/AMFKHRHFIHKQYVNKKTLLKEEKHKRVNKEXSNYAVXLKV
Ga0272435_100106124F086375N/AMFTLFVNSKSIASXNHGENXFNEIKEYYKQQNNDHVIIFKXLHKLRQFNVXKEVNEIDKAAMKDNVRDEIEQERKNKDIHDNASQ
Ga0272435_100106125F076668N/AMTCLLLTSSFLACASARKTSKNLMHSTDHYAIKETSVFKFTTTTKKIMHMSNALSIDILMLCNRKDATNQALLRCMKFKNIRRLQKISFSKXSSKDXLERLCMIMLKXTCYNMIFAFSALSXMLFKKSLKTL
Ga0272435_100106131F001253GAGVTFIKDAMKDVLISSTMSSLNDLFASKSLTIECVLFSNEISYSLKSLIDTEAADYSFIDKLITQNVYDHLQIESLCLIKLKSIREFDNHYAKKLITHAIYSNLTVQNHMKRFVFMLITRLDQHQMILEKT
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