NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1001140

Scaffold Ga0272435_1001140


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1001140 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31836
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (13.79%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001253Metagenome736Y
F018839Metagenome232Y
F028367Metagenome191Y
F028978Metagenome189Y
F044226Metagenome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_100114017F044226N/AMMKFNDNFNIFSITSMILFYFNKEFHSXMSFNSDTTNYEITHEXLKAKKANDIVI
Ga0272435_100114019F028978N/AMLNXMKIVDLKKKENDESIYXLILEANRINENCILLHEVILKDEAQYKDTKLRDYXVQNEILYXDDFL
Ga0272435_100114021F001253N/AMKDVLISSTMSSLNDFFALKSLTTEYVLFSNEISYSLKSLIDIEAADYSFIDELITQNVCDHLQIESLSLIKFKSIREFNDHYAKKLITYAIYLNLTVQDHMKHFVFMLITQLDQHQMILEKT
Ga0272435_100114027F018839AGAAGMMMIAKVVTFNRLTSDLYAAVFIIAMFIELKDEAKLTELNDFMILLNEDDFSLS
Ga0272435_10011409F028367N/ALCKLNEILLKENYFEKSFLIDVHLISQKXSFNLHLLINSDSVIYMIIHFNLVNKVCKKLKIQFISLTKEKLIRNYDKKIFKKTITHKILFNLIIENHKKLILSMLIVDINHHEVILSKLXMNKNEILLNMQNNIIVFLN
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