Scaffold Ga0272435_1001143

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0272435_1001143

Scaffold Ga0272435_1001143

Overview

Basic Information
Taxon OID	3300031447 Open in IMG/M
Scaffold ID	Ga0272435_1001143 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	31786
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (13.51%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.7	Long. (^o)	159.2	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032884	Metagenome	178	Y
F036035	Metagenome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100114321	F032884	GAG	MTIRNERVERKECEETKKNESTMMRIEKERLYAQTIDVIDQXKDIKQRLXSDYM
Ga0272435_100114331	F036035	N/A	MKNDAMQREHHELKKASKNHERDNSNHLNDILDKHTESISDCDVIKESDERERK

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