NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272435_1001398

Scaffold Ga0272435_1001398


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1001398 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27130
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (6.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008735Metagenome328Y
F037509Metagenome167Y
F044227Metagenome154Y
F070710Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_100139822F070710N/AMXKTFSDXKHTKSLFSAESTTATNNFMTKQLFLQILQYNIRKLLKIQESLLINREVCKFNIIIIQKQECNINDLQLFSSAYNFFHLVKNSSSQSRTCTYVNKHLKFNQXKVETAESNICLIRLLTCNTDDEMQMLKLLNIYNSCSLFTTFTEKSSIIFHLNELLKNDCKQLIIKDFNLYYSHXEEXRCFTRHMTTDTLLNIITNARLKLLLKSDIITHKTHNQFTMIDLIFNSEKIQFMTCKCKIQINLHQRLNHLLIITKLCL
Ga0272435_100139826F044227N/AMIELQMKSSDDKACTHALLELIAFAIKNVTRCXLLELSNNYCHHEEFQNSDENDDENETLKAI
Ga0272435_100139830F008735N/AMKEITIIVHVHALYQTLLSCIQLIFVLLILRYVKKLLESKSNDDSDRICKKMNNEKRLIVQDLCNDLSYHYKRLRIQLYINXRTENDEXEXNDDIMLSNLILKLLHYTKDLDXIFDHTLSELFNSMLIVDQEIMKXFHLSKRITRXDFNIXKRCRKCKSFVMSETRLN
Ga0272435_10013984F037509N/AMILIFILIQIHLTDNKMNIKKFVYLMINNIERQNNIKRLIELMRTYDHVIAREFIAQSVASVQID
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.