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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031447 Open in IMG/M |
| Scaffold ID | Ga0272435_1001475 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 26219 |
| Total Scaffold Genes | 29 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (10.34%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.7 | Long. (o) | 159.2 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F024448 | Metagenome | 205 | Y |
| F028978 | Metagenome | 189 | Y |
| F044227 | Metagenome | 154 | Y |
| F046102 | Metagenome | 151 | Y |
| F055318 | Metagenome | 138 | Y |
| F064252 | Metagenome | 128 | Y |
| F100079 | Metagenome | 102 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272435_100147511 | F046102 | N/A | MSSLNDLFASKSLTIECVLFSNEINYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIREFDDHYAKKLITHTIYSNLTVQDHMKRFTFMLITXLNQYQMILEKTXMNKIKMTIDMKNDRLQFSSFEAHIKAFIKAHSTVLSSKKIAIEQKSSTSI |
| Ga0272435_100147514 | F028978 | N/A | MKITDLEKKKNNESIYXLILEANRINENYILLREVVLKDEAQYKDTKLRNCXVQNEILYQSDLLXVFFDEHLQMKLI |
| Ga0272435_100147518 | F064252 | N/A | MKSQASIKNYTXRESSTLFNNNHHKFFKFLNLFIFIDEDELTXNSXRIKINDKLQTNVNHFNNENICIVYVISRLEDDSAEQIFAXHQHNALHSYISINELFEHLKEIYNELNRNQKCCHEYNALRQAEKSFNVFYFNFIKLFSYLKYNDCTLMNDLQNKINNHLQNALSICSENFTLLTHLRIFLQDVNNKQRVNYQLRSQLCTVIIKVTVILDKCIATSSSMITLIINYVKFILSSISELARLFIICYTCKILSYLFKNCSQNKINTSASYAFIFYLHEIIISKNKKNEKMSSFKDDKTKN |
| Ga0272435_100147519 | F024448 | N/A | MSMSDDSFASESLTTECVLSSNKISYSLKSLIDIKAADYLFIDEVIVQIVCDQLQIKSLTLIKAKSIQEFDDYYVKKLITHVIYLNLTVQDHTINTVFMLITXLNQHQMILEKTXMNKINLVIDMQINFLQFSNFTLNLKSIVLLTSNKTIMKQKSLTFTHILKRSFTIFQLSLKSLSFSQLN |
| Ga0272435_10014754 | F044227 | N/A | MQLQIKSSDNKACIHAFLKLIAFAIKNVTKCXLLELLNNHHYYEKSQSSSKDDDENEALEAI |
| Ga0272435_10014755 | F100079 | N/A | MFKHRHFIHEXYADEKTSLRKEKHKRINKEXLNYAVXLKV |
| Ga0272435_10014756 | F055318 | N/A | MLRDDEALCIDCMQSFRDHADFDNLNAHATSNLHADEKVK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |