Scaffold Ga0272435

Basic Information
Taxon OID	3300031447 Open in IMG/M
Scaffold ID	Ga0272435_1001654 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031447 Open in IMG/M

Scaffold ID

Ga0272435_1001654 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	24188
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (13.04%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

24188

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (13.04%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.7	Long. (^o)	159.2	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.7

Long. (^o)

159.2

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F004755	Metagenome	424	Y
F021216	Metagenome	219	Y
F028368	Metagenome	191	Y
F059497	Metagenome	133	Y
F096307	Metagenome	104	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100165419	F021216	N/A	MSQMKSRMKSNAMRRKHHRLEKAFRNHERSDDDHSNDTLNEHTESISSCNVIKELNEREK
Ga0272435_100165421	F002432	N/A	MQNDXAKXISMIEFSNNVNTFLIILMISFYFNKEFHSRMSFNSDTTDYKITREXIEARKANNIVIXMKELLNFDRQQLKKTKLIIEAQINKHKXDVIYEIDDQIXLSFRNVKIMRSCKNLKDKQLDFYSIIVKVETFYHLRLSTSMKHIHSMFSSKLLQSYSENSLSEQYSESLRLITIKNDEHXKIDDILNFRCYQDQIQYKVKXKDLDKDNKXYYVDKEKFDDLEKVLNEFYKLYSSKSR
Ga0272435_10016544	F059497	N/A	MSIEDIDRKIIYNTQCELDVINVFSVNETTQNLEDIKVKLSLKYQNFLDVFDRAQANKLSSHRSYDHKIELTSDITSFCC
Ga0272435_10016547	F096307	N/A	MLYIVVTQIDASLKEDVLKHKKDVDLKDVCDTKKYVCHKNLLITHNTKKYVYLEDNRSXLECARKEKRCXVIFESNLSQI
Ga0272435_10016548	F028368	GAG	LCKLDEILSKENYFEKSFLIDAYFIFQNQSFNLRSLINSDSIIYTIIHSNLVNKVCKKLRIQFILLVKEKLIKDYDEKIFKKIITHKILFNLIIESYKKLTVSMLIADIDHHEVILSKFXMNKNEILLNMQNDVIVFLNQLNTSISVFSIFLNSKHLSXSRLSLFFSITQTKTFMMLKQFISITAQKESFSIQSINVASFKTLLNHLKKNKIKVFALFMMNINRKIAYNTQCNLNALNVF
Ga0272435_10016549	F004755	GAG	LFNDLNKKVNFHKEYYNLIQEFKKFNEFYTQFQRLFFYLDYHKKQLIADLKDKIHLFIXVDQLVQSDFLKEIHFYLICLNNDQQVIQEIKNKIKYINDLFKTIFYRVSVITQSVNHSKSRETILTSIKEVNILVESCFICHKSDHNFKECFNQSTRINAVNNEYDYFDFDLNFDSKN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272435_1001654

Overview

Ecosystem & Geography

Associated Families

Sequences