NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1001688

Scaffold Ga0272435_1001688


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1001688 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23782
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (11.54%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Umbilicariomycetidae → Umbilicariales → Umbilicariaceae → Lasallia → Lasallia pustulata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001253Metagenome736Y
F028978Metagenome189Y
F048017Metagenome148Y
F055317Metagenome138Y
F057012Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_100168820F055317GAGLKAQLQAFTAITVNVIISAFLIVIYFKQFRYHKILDSSMFTDEKNSTXENRFLDIQEKLAMNIDIFSNEFYKLSYINSQLADDIIKVTQVKRNLNCDNLYLTVNELLKKLAQLFHDSDKKDNYRREYINLIQESKKFSDFFNQFQQLYIYLKYQKNVLVINLKNKINFHLQIFXTTQMKLLIKLSDIXNYLIHLNNEHKAVXKIKNKLLKHDDSKIIISKVTIAVQSSTLKSDXLKSRSAVLTNVKNANVLVEICFICHKSDHSFKECLNQSIKVNAVDENYNHFELNTESEFKSKN
Ga0272435_100168822F048017N/AMKNKQLSQHQVNYLNILSKFNFQIIFKSDKMNTKVNALTXMFLANVSESVKXFKDCFQTILIFDRVNILSIDLKLSANSKSEVNLYQRVXLVNQMNEFCSKYKQAENDNKLKLHSIKMKNYKIVDNILFRKDEIIVGERLKKLSQSQNFFFDFNSNSTFCIC
Ga0272435_100168826F057012AGAAGMQLSXISSDAXNCSKFKKRLAFIKVVTENDILIFCFISMFDDSFDFKSFTVDVILSNLEKIFRFFTLIDTEVTDMTFINESLMSELCECFNIQSILLSKSKLIXLYNEIFDXKLITYTLYTLIMIQEHKNEMMSLLITHLNQHKIIFENLXLKRNQMLINSANDXLISSLKIQTSKSVILKVSSQSAFYKSESNEICKMKXKNLNSIVTLMIILKRLMNQKSVNRFIESALIAKQST
Ga0272435_10016884F028978N/AMKIADLKEKENDESIYQLILKANRINENCILLREVVLKDKTQYEDIKLKDCXVQNEILYXDDLL
Ga0272435_10016888F001253N/AMKDVLISSTMSSSNNLFASKSLTTECVLFSNEISYSLKSLINIEAADYSFIDKLIAQNVCDHLQIESLSLIKLKSIREFNDYYAKKLITHAIYLNLTVQDHMKRFVFMLIT
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