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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031447 Open in IMG/M |
| Scaffold ID | Ga0272435_1001789 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 22686 |
| Total Scaffold Genes | 24 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (25.00%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.7 | Long. (o) | 159.2 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006206 | Metagenome | 378 | Y |
| F008115 | Metagenome | 338 | Y |
| F057010 | Metagenome | 136 | N |
| F057011 | Metagenome | 136 | Y |
| F070712 | Metagenome | 122 | Y |
| F076668 | Metagenome | 117 | Y |
| F086375 | Metagenome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272435_10017891 | F057010 | N/A | MTLSFIIKHRSSLDLFLLKHLFNSISSFFLIMSRLFKEHFEASFFIVKDNDSFAEIITSSMTMKALKKRCEKLKARLQAREITLSSSIYSERSRFQKIFDSLLFTDEKNSIXENXYEKVQNKLKINVDLFSSEXVKLSYVHFRLFNDAAEIIQSRRERDCFNSYKIVDELLKKLAQLFNDSDKEVNFRRNYYNLIQEQKKFSEFYTQFQRLFFYLDYQEKQLIIDLKNKINSRLRFAXVTQLIQLSTLKEIRFYLIRLNNDQRAIREIKNREAMIKAXTTKQIIFVEESVKATRRIIEMKMTDQSKSRDAVLTNVKENDLLIENCFLCHKSDHTSKECLNRSFRINTLDDEFDHSLNFDSESDSKN |
| Ga0272435_100178914 | F086375 | N/A | MFTLFVNSKSIASXNRDENXFNKIKKHYKXQNNDHIVIFKXLHKLRQFNVXKEANEIDKAAMKDNLRDEIEQERKNKDIHDNASQ |
| Ga0272435_100178915 | F076668 | N/A | MTCLLLTSSFLACASARKTSKNLMHSTDHYAIKETSVFKFTTTTKKIMHMSNALSTDILMLCNRKDATNQTLLRCAKFENIRRLQKISFSKXFSKDXLKRLCMIMLEQTCYNMIFAFSALSXVLFKKSLKTLXFSLXKVSALLFHIITLVVEFSLTFCSMQISTXQQFMSNASSFKIKIXDLXRISXXILMSCFSRQTRKCLSLSIR |
| Ga0272435_100178918 | F008115 | N/A | MLXNVYXLHDLSSSIVSNRDSQFVSIMXQSLCKXLKITTSLLTIYHSEINDQLKXANQDVERELRIYCNYMQNDXAKXLSMMKFSENFNIFSIISKISFYFNKEFHSRMGFDSDTTDYKITCERLEARKVNDIIIXMKELLIFDRQQLKKMKQIIEAQINKHRRDVIYEVDDXVXLFFRNIKTTRSCKNLKDKQLESYQITVKVEIVYHLHLLISMKQLHSMFSSKLLRSYLDNFLSEQHSESSRSLTIEDDEHXKINDILNSRRYRDXIQYKVKXMRLDXNNEXYYVNKEEFKNSKEVLVEFHKLYSDKSH |
| Ga0272435_100178922 | F057011 | GAG | LCSQIEVLLKENYFEKSFLINASFISQSNSFSLRSLIDSDFVVYTLIHDKLVNKVCQKLEIQSILLAKEKLIQDYDKKLARKTITHKILLNLTIKSHKKLTMSMLIADIEHHEAILSKLXMNKNEILLNMRHDTIVFSDQLNTSISIFSILSNIKHSSXSRSTSISLAAYSKIFKMLKRSVSFFQKESFSI |
| Ga0272435_100178923 | F070712 | GAG | MNDIKEKKFLIKVRKQVIFAEKXDSLNFYRKIEVTTFVDHSKLHDVILTSVKDINLQAEIYFICHKSDYTSRECSDQSRVNALKDDEFNQFTLNSEFNSDSKN |
| Ga0272435_10017899 | F006206 | N/A | LKGNYFDKSFLVDTLLILQNELFNLRSLIDSDSVVYMIIHINLVDKVCKELKIQSISLTKEKLIKEYDEKIFKKIITHKILLNLIIESHKKLTVSMLIADINHHEVILEKS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |